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AbsoluteQuantitationMethodFile.h
Go to the documentation of this file.
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// --------------------------------------------------------------------------
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// OpenMS -- Open-Source Mass Spectrometry
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// --------------------------------------------------------------------------
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// Copyright The OpenMS Team -- Eberhard Karls University Tuebingen,
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// ETH Zurich, and Freie Universitaet Berlin 2002-2022.
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//
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// This software is released under a three-clause BSD license:
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// * Redistributions of source code must retain the above copyright
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// notice, this list of conditions and the following disclaimer.
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// * Redistributions in binary form must reproduce the above copyright
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// notice, this list of conditions and the following disclaimer in the
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// documentation and/or other materials provided with the distribution.
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// * Neither the name of any author or any participating institution
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// may be used to endorse or promote products derived from this software
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// without specific prior written permission.
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// For a full list of authors, refer to the file AUTHORS.
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// --------------------------------------------------------------------------
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// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS "AS IS"
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// AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
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// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR PURPOSE
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// ARE DISCLAIMED. IN NO EVENT SHALL ANY OF THE AUTHORS OR THE CONTRIBUTING
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// INSTITUTIONS BE LIABLE FOR ANY DIRECT, INDIRECT, INCIDENTAL, SPECIAL,
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// EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO,
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// PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES; LOSS OF USE, DATA, OR PROFITS;
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// OR BUSINESS INTERRUPTION) HOWEVER CAUSED AND ON ANY THEORY OF LIABILITY,
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// WHETHER IN CONTRACT, STRICT LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR
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// OTHERWISE) ARISING IN ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF
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// ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.
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//
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// --------------------------------------------------------------------------
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// $Maintainer: Douglas McCloskey, Pasquale Domenico Colaianni $
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// $Authors: Douglas McCloskey, Pasquale Domenico Colaianni $
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// --------------------------------------------------------------------------
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#pragma once
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#include <
OpenMS/ANALYSIS/QUANTITATION/AbsoluteQuantitationMethod.h
>
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#include <
OpenMS/FORMAT/CsvFile.h
>
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#include <map>
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namespace
OpenMS
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{
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class
OPENMS_DLLAPI
AbsoluteQuantitationMethodFile
:
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private
CsvFile
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{
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public
:
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AbsoluteQuantitationMethodFile
() =
default
;
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~
AbsoluteQuantitationMethodFile
()
override
=
default
;
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void
load(
const
String
& filename, std::vector<AbsoluteQuantitationMethod> & aqm_list);
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void
store(
const
String
& filename,
const
std::vector<AbsoluteQuantitationMethod> & aqm_list);
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protected
:
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void
parseLine_(
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const
StringList
& line,
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const
std::map<String, Size> & headers,
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AbsoluteQuantitationMethod
& aqm
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)
const
;
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void
setCastValue_(
const
String
& key,
const
String
& value,
Param
& params)
const
;
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};
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}
// namespace OpenMS
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AbsoluteQuantitationMethod.h
OpenMS::String
A more convenient string class.
Definition:
String.h:58
OpenMS
Main OpenMS namespace.
Definition:
FeatureDeconvolution.h:47
OpenMS::AbsoluteQuantitationMethod
AbsoluteQuantitationMethod is a class to hold information about the quantitation method and for apply...
Definition:
AbsoluteQuantitationMethod.h:52
CsvFile.h
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition:
ListUtils.h:70
OpenMS::CsvFile
This class handles csv files. Currently only loading is implemented.
Definition:
CsvFile.h:49
OpenMS::AbsoluteQuantitationMethodFile
File adapter for AbsoluteQuantitationMethod files.
Definition:
AbsoluteQuantitationMethodFile.h:50
OpenMS::Param
Management and storage of parameters / INI files.
Definition:
Param.h:69
OpenMS
FORMAT
AbsoluteQuantitationMethodFile.h
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