OpenMS  3.0.0
ConsensusIDAlgorithmPEPIons.h
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31 // $Maintainer: Hendrik Weisser $
32 // $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
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34 
35 #pragma once
36 
38 
39 namespace OpenMS
40 {
48  class OPENMS_DLLAPI ConsensusIDAlgorithmPEPIons :
50  {
51  public:
54 
55  private:
58 
61 
64 
67 
69  void updateMembers_() override;
70 
72  double getSimilarity_(AASequence seq1, AASequence seq2) override;
73 
74  };
75 
76 } // namespace OpenMS
77 
ConsensusIDAlgorithmSimilarity.h
OpenMS::ConsensusIDAlgorithmSimilarity
Abstract base class for ConsensusID algorithms that take peptide similarity into account.
Definition: ConsensusIDAlgorithmSimilarity.h:54
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::ConsensusIDAlgorithmPEPIons
Calculates a consensus from multiple ID runs based on PEPs and shared ions.
Definition: ConsensusIDAlgorithmPEPIons.h:48
OpenMS::ConsensusIDAlgorithmPEPIons::mass_tolerance_
double mass_tolerance_
Fragment mass tolerance (for "PEPIons_")
Definition: ConsensusIDAlgorithmPEPIons.h:57
OpenMS::ConsensusIDAlgorithmPEPIons::min_shared_
Size min_shared_
Min. number of shared fragments (for "PEPIons")
Definition: ConsensusIDAlgorithmPEPIons.h:60
OpenMS::AASequence
Representation of a peptide/protein sequence.
Definition: AASequence.h:111