OpenMS  3.0.0
ConsensusIDAlgorithmPEPMatrix.h
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31 // $Maintainer: Hendrik Weisser $
32 // $Authors: Andreas Bertsch, Marc Sturm, Sven Nahnsen, Hendrik Weisser $
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34 
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
51  class OPENMS_DLLAPI ConsensusIDAlgorithmPEPMatrix :
53  {
54  public:
57 
58 
59  private:
60 
63 
66 
69 
71  double getSimilarity_(AASequence seq1, AASequence seq2) override;
72 
73  // Docu in base class
74  void updateMembers_() override;
75  };
76 
77 } // namespace OpenMS
78 
ConsensusIDAlgorithmSimilarity.h
OpenMS::ConsensusIDAlgorithmSimilarity
Abstract base class for ConsensusID algorithms that take peptide similarity into account.
Definition: ConsensusIDAlgorithmSimilarity.h:54
NeedlemanWunsch.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::ConsensusIDAlgorithmPEPMatrix::alignment_
NeedlemanWunsch alignment_
object for alignment score calculation
Definition: ConsensusIDAlgorithmPEPMatrix.h:62
OpenMS::NeedlemanWunsch
This class contains functions that are used to calculate the global alignment score of two amino acid...
Definition: NeedlemanWunsch.h:46
OpenMS::ConsensusIDAlgorithmPEPMatrix
Calculates a consensus from multiple ID runs based on PEPs and sequence similarities.
Definition: ConsensusIDAlgorithmPEPMatrix.h:51
OpenMS::AASequence
Representation of a peptide/protein sequence.
Definition: AASequence.h:111