OpenMS  3.0.0
Contaminants.h File Reference
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/FORMAT/FASTAFile.h>
#include <OpenMS/METADATA/PeptideIdentification.h>
#include <OpenMS/QC/QCBase.h>
#include <unordered_set>
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Classes

class  Contaminants
 This class is a metric for the QualityControl TOPP tool. More...
 
struct  Contaminants::ContaminantsSummary
 structure for storing results More...
 

Namespaces

 OpenMS
 Main OpenMS namespace.
 

Class Documentation

◆ OpenMS::Contaminants::ContaminantsSummary

struct OpenMS::Contaminants::ContaminantsSummary

structure for storing results

Collaboration diagram for Contaminants::ContaminantsSummary:
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Class Members
double all_contaminants_ratio (#all contaminants/ #peptides in all)
double assigned_contaminants_intensity_ratio (intensity of contaminants in assigned/ intensity of peptides in assigned)
double assigned_contaminants_ratio (#contaminants in assigned/ #peptides in assigned)
pair< Int64, Int64 > empty_features (features without peptideidentification or with peptideidentifications but without hits; all features)
double unassigned_contaminants_ratio (#contaminants in unassigned/ #peptides in unassigned)