OpenMS  3.0.0
DataFrameWriter.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Witold Wolski $
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34 
35 #pragma once
36 
37 #include <fstream>
38 #include <string>
39 #include <vector>
40 
41 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
42 
43 namespace OpenSwath
44 {
45  struct OPENSWATHALGO_DLLAPI IDataFrameWriter
46  {
47  virtual ~IDataFrameWriter();
48  virtual void colnames(const std::vector<std::string>& colnames) = 0;
49  virtual void store(const std::string& rowname,
50  const std::vector<double>& values) = 0;
51  };
52 
53  struct OPENSWATHALGO_DLLAPI DataMatrix :
55  {
56 private:
57  std::vector<std::string> colnames_;
58  std::vector<std::string> rownames_;
59  std::vector<std::vector<double> > store_;
60 
61 public:
62  DataMatrix();
63 
64  void store(const std::string& rowname,
65  const std::vector<double>& values) override;
66 
67  void colnames(const std::vector<std::string>& colnames) override;
68 
69  };
70 
71  struct OPENSWATHALGO_DLLAPI CSVWriter :
73  {
74 private:
75  std::ofstream file_stream_;
76  std::string sep_;
77  std::string eol_;
78 
79 public:
80  explicit CSVWriter(std::string filename);
81 
82  void store(const std::string& rowname,
83  const std::vector<double>& values) override;
84 
85  ~CSVWriter() override;
86 
87  void colnames(const std::vector<std::string>& colnames) override;
88 
89  };
90 }
91 
OpenSwath
Definition: Scoring.h:43
OpenSwath::DataMatrix::rownames_
std::vector< std::string > rownames_
Definition: DataFrameWriter.h:58
OpenSwath::DataMatrix
Definition: DataFrameWriter.h:53
OpenSwath::CSVWriter::eol_
std::string eol_
Definition: DataFrameWriter.h:77
OpenSwath::DataMatrix::colnames_
std::vector< std::string > colnames_
Definition: DataFrameWriter.h:57
OpenSwath::CSVWriter::file_stream_
std::ofstream file_stream_
Definition: DataFrameWriter.h:75
OpenSwath::CSVWriter
Definition: DataFrameWriter.h:71
OpenSwath::CSVWriter::sep_
std::string sep_
Definition: DataFrameWriter.h:76
OpenSwath::DataMatrix::store_
std::vector< std::vector< double > > store_
Definition: DataFrameWriter.h:59
OpenSwath::IDataFrameWriter
Definition: DataFrameWriter.h:45