OpenMS  3.0.0
DetectabilitySimulation.h
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31 // $Maintainer: Timo Sachsenberg$
32 // $Authors: Stephan Aiche, Chris Bielow$
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34 
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
52  class OPENMS_DLLAPI DetectabilitySimulation :
53  public DefaultParamHandler
54  {
55 
56 public:
62 
65 
67  ~DetectabilitySimulation() override;
69 
71  DetectabilitySimulation& operator=(const DetectabilitySimulation& source);
72 
81  void filterDetectability(SimTypes::FeatureMapSim& features);
82 
83 
84  void predictDetectabilities(std::vector<String>& peptides_vector, std::vector<double>& labels,
85  std::vector<double>& detectabilities);
86 private:
88  void setDefaultParams_();
89 
91  void updateMembers_() override;
92 
94  double min_detect_;
95 
98 
99 protected:
101  void svmFilter_(SimTypes::FeatureMapSim&);
102 
104  void noFilter_(SimTypes::FeatureMapSim&);
105 
106  };
107 
108 }
109 
DefaultParamHandler.h
SimTypes.h
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::DetectabilitySimulation::min_detect_
double min_detect_
Minimum allowed detectability likelihood of a peptide.
Definition: DetectabilitySimulation.h:94
OpenMS::DefaultParamHandler
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::FeatureMap
A container for features.
Definition: FeatureMap.h:98
OpenMS::DetectabilitySimulation::dt_model_file_
OpenMS::String dt_model_file_
Name of the svm model file.
Definition: DetectabilitySimulation.h:97
OpenMS::DetectabilitySimulation
Simulates peptide detectability.
Definition: DetectabilitySimulation.h:52