OpenMS  3.0.0
ExperimentalSettings.h
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31 // $Maintainer: Timo Sachsenberg $
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34 
35 #pragma once
36 
37 #include <OpenMS/METADATA/Sample.h>
39 #include <OpenMS/METADATA/HPLC.h>
45 
46 #include <vector>
47 
48 namespace OpenMS
49 {
59  class OPENMS_DLLAPI ExperimentalSettings :
60  public MetaInfoInterface,
61  public DocumentIdentifier
62  {
63 public:
64 
66  ExperimentalSettings() = default;
68  ExperimentalSettings(const ExperimentalSettings &) = default;
72  ~ExperimentalSettings() override;
73 
75  ExperimentalSettings & operator=(const ExperimentalSettings &) = default;
77  ExperimentalSettings & operator=(ExperimentalSettings &&) = default;
78 
80  bool operator==(const ExperimentalSettings & rhs) const;
82  bool operator!=(const ExperimentalSettings & rhs) const;
83 
85  const Sample & getSample() const;
87  Sample & getSample();
89  void setSample(const Sample & sample);
90 
92  const std::vector<SourceFile> & getSourceFiles() const;
94  std::vector<SourceFile> & getSourceFiles();
96  void setSourceFiles(const std::vector<SourceFile> & source_files);
97 
99  const std::vector<ContactPerson> & getContacts() const;
101  std::vector<ContactPerson> & getContacts();
103  void setContacts(const std::vector<ContactPerson> & contacts);
104 
106  const Instrument & getInstrument() const;
108  Instrument & getInstrument();
110  void setInstrument(const Instrument & instrument);
111 
113  const HPLC & getHPLC() const;
115  HPLC & getHPLC();
117  void setHPLC(const HPLC & hplc);
118 
120  const DateTime & getDateTime() const;
122  void setDateTime(const DateTime & date);
123 
125  const String & getComment() const;
127  void setComment(const String & comment);
128 
130  const std::vector<ProteinIdentification> & getProteinIdentifications() const;
132  std::vector<ProteinIdentification> & getProteinIdentifications();
134  void setProteinIdentifications(const std::vector<ProteinIdentification> & protein_identifications);
135 
137  const String & getFractionIdentifier() const;
139  void setFractionIdentifier(const String & fraction_identifier);
140 
141 protected:
143  std::vector<SourceFile> source_files_;
144  std::vector<ContactPerson> contacts_;
149  std::vector<ProteinIdentification> protein_identifications_;
151  };
152 
154  OPENMS_DLLAPI std::ostream & operator<<(std::ostream & os, const ExperimentalSettings & exp);
155 
156 } // namespace OpenMS
157 
HPLC.h
DocumentIdentifier.h
ContactPerson.h
OpenMS::Sample
Meta information about the sample.
Definition: Sample.h:59
OpenMS::ExperimentalSettings
Description of the experimental settings.
Definition: ExperimentalSettings.h:59
OpenMS::String
A more convenient string class.
Definition: String.h:58
KDTree::operator!=
bool operator!=(_Iterator< _Val, _Ref, _Ptr > const &, _Iterator< _Val, _Ref, _Ptr > const &)
Definition: KDTree.h:824
OpenMS::ExperimentalSettings::hplc_
HPLC hplc_
Definition: ExperimentalSettings.h:146
OpenMS::ExperimentalSettings::source_files_
std::vector< SourceFile > source_files_
Definition: ExperimentalSettings.h:143
OpenMS::ExperimentalSettings::instrument_
Instrument instrument_
Definition: ExperimentalSettings.h:145
OpenMS::Instrument
Description of a MS instrument.
Definition: Instrument.h:63
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::MetaInfoInterface
Interface for classes that can store arbitrary meta information (Type-Name-Value tuples).
Definition: MetaInfoInterface.h:60
OpenMS::DocumentIdentifier
Manage source document information.
Definition: DocumentIdentifier.h:55
ProteinIdentification.h
OpenMS::ExperimentalSettings::comment_
String comment_
Definition: ExperimentalSettings.h:148
Instrument.h
OpenMS::ExperimentalSettings::contacts_
std::vector< ContactPerson > contacts_
Definition: ExperimentalSettings.h:144
OpenMS::operator<<
std::ostream & operator<<(std::ostream &os, const AccurateMassSearchResult &amsr)
OpenMS::HPLC
Representation of a HPLC experiment.
Definition: HPLC.h:50
OpenMS::Internal::operator==
bool operator==(const IDBoostGraph::ProteinGroup &lhs, const IDBoostGraph::ProteinGroup &rhs)
OpenMS::ExperimentalSettings::protein_identifications_
std::vector< ProteinIdentification > protein_identifications_
Definition: ExperimentalSettings.h:149
MetaInfoInterface.h
OpenMS::ExperimentalSettings::sample_
Sample sample_
Definition: ExperimentalSettings.h:142
OpenMS::ExperimentalSettings::fraction_identifier_
String fraction_identifier_
Definition: ExperimentalSettings.h:150
OpenMS::ExperimentalSettings::datetime_
DateTime datetime_
Definition: ExperimentalSettings.h:147
SourceFile.h
OpenMS::DateTime
DateTime Class.
Definition: DateTime.h:58
Sample.h