OpenMS  3.0.0
FASTAFile.h File Reference
#include <OpenMS/CONCEPT/Exception.h>
#include <OpenMS/DATASTRUCTURES/String.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <fstream>
#include <utility>
#include <vector>
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Classes

class  FASTAFile
 This class serves for reading in and writing FASTA files If the protein/gene sequence contains unusual symbols (such as translation end (*)), they will be kept! You can use aggregate methods load() and store() to read/write a set of protein sequences at the cost of memory. More...
 
struct  FASTAFile::FASTAEntry
 FASTA entry type (identifier, description and sequence) The first String corresponds to the identifier that is written after the > in the FASTA file. The part after the first whitespace is stored in description and the text from the next line until the next > (exclusive) is stored in sequence. More...
 

Namespaces

 OpenMS
 Main OpenMS namespace.