OpenMS  3.0.0
FeatureFinderMultiplex.cpp File Reference
#include <OpenMS/config.h>
#include <OpenMS/APPLICATIONS/TOPPBase.h>
#include <OpenMS/CONCEPT/ProgressLogger.h>
#include <OpenMS/DATASTRUCTURES/DBoundingBox.h>
#include <OpenMS/DATASTRUCTURES/ListUtils.h>
#include <OpenMS/KERNEL/MSExperiment.h>
#include <OpenMS/KERNEL/StandardTypes.h>
#include <OpenMS/KERNEL/ConsensusMap.h>
#include <OpenMS/KERNEL/FeatureMap.h>
#include <OpenMS/FORMAT/MzMLFile.h>
#include <OpenMS/FORMAT/FeatureXMLFile.h>
#include <OpenMS/MATH/STATISTICS/LinearRegression.h>
#include <OpenMS/KERNEL/RangeUtils.h>
#include <OpenMS/KERNEL/ChromatogramTools.h>
#include <OpenMS/METADATA/MSQuantifications.h>
#include <OpenMS/TRANSFORMATIONS/RAW2PEAK/PeakPickerHiRes.h>
#include <OpenMS/FORMAT/ConsensusXMLFile.h>
#include <OpenMS/FORMAT/MzQuantMLFile.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMasses.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexDeltaMassesGenerator.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexIsotopicPeakPattern.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringCentroided.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexFilteringProfile.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexClustering.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/MultiplexSatelliteCentroided.h>
#include <OpenMS/TRANSFORMATIONS/FEATUREFINDER/FeatureFinderMultiplexAlgorithm.h>
#include <OpenMS/COMPARISON/CLUSTERING/GridBasedCluster.h>
#include <OpenMS/DATASTRUCTURES/DPosition.h>
#include <boost/algorithm/string/split.hpp>
#include <boost/algorithm/string/replace.hpp>
#include <boost/algorithm/string/classification.hpp>
#include <QDir>
#include <cmath>
#include <vector>
#include <algorithm>
#include <fstream>
#include <limits>
#include <locale>
#include <iomanip>
Include dependency graph for FeatureFinderMultiplex.cpp: