OpenMS  3.0.0
GNPSMetaValueFile.h
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31 // $Maintainer: Axel Walter $
32 // $Authors: Axel Walter $
33 
35 
36 #pragma once
37 
38 namespace OpenMS
39 {
40  class OPENMS_DLLAPI GNPSMetaValueFile
41  {
42  public:
44  static void store(const ConsensusMap& consensus_map, const String& output_file);
45  };
46 }
IonIdentityMolecularNetworking.h
ConsensusXMLFile.h
OpenMS::TOPPBase
Base class for TOPP applications.
Definition: TOPPBase.h:147
OpenMS::IonIdentityMolecularNetworking::writeSupplementaryPairTable
static void writeSupplementaryPairTable(const ConsensusMap &consensus_map, const String &output_file)
OpenMS::IonIdentityMolecularNetworking::annotateConsensusMap
static void annotateConsensusMap(ConsensusMap &consensus_map)
OpenMS::GNPSMGFFile
Definition: GNPSMGFFile.h:43
OpenMS::String
A more convenient string class.
Definition: String.h:58
ConsensusMap.h
TOPPGNPSExport::TOPPGNPSExport
TOPPGNPSExport()
Definition: GNPSExport.cpp:111
TOPPGNPSExport::registerOptionsAndFlags_
void registerOptionsAndFlags_() override
Sets the valid command line options (with argument) and flags (without argument).
Definition: GNPSExport.cpp:128
TOPPGNPSExport
Definition: GNPSExport.cpp:108
OpenMS::GNPSMetaValueFile
Definition: GNPSMetaValueFile.h:40
TOPPGNPSExport::main_
ExitCodes main_(int, const char **) override
The actual "main" method. main_() is invoked by main().
Definition: GNPSExport.cpp:154
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::GNPSMetaValueFile::store
static void store(const ConsensusMap &consensus_map, const String &output_file)
Generate a meta value table (tsv file) for GNPS FBMN with information on the input mzML files extract...
OpenMS::GNPSMGFFile::store
void store(const String &consensus_file_path, const StringList &mzml_file_paths, const String &out) const
Create file for GNPS molecular networking.
GNPSQuantificationFile.h
OpenMS::DefaultParamHandler::setParameters
void setParameters(const Param &param)
Sets the parameters.
GNPSMGFFile.h
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:82
OpenMS::StringList
std::vector< String > StringList
Vector of String.
Definition: ListUtils.h:70
OpenMS::ConsensusXMLFile::load
void load(const String &filename, ConsensusMap &map)
Loads a consensus map from file and calls updateRanges.
GNPSMetaValueFile.h
main
int main(int argc, const char **argv)
Definition: GNPSExport.cpp:195
OpenMS::GNPSQuantificationFile::store
static void store(const ConsensusMap &consensus_map, const String &output_file)
OpenMS::TOPPBase::ExitCodes
ExitCodes
Exit codes.
Definition: TOPPBase.h:152
OpenMS::TOPPBase::main
ExitCodes main(int argc, const char **argv)
Main routine of all TOPP applications.
OpenMS::ProgressLogger::setLogType
void setLogType(LogType type) const
Sets the progress log that should be used. The default type is NONE!
TOPPBase.h
OpenMS::ConsensusXMLFile
This class provides Input functionality for ConsensusMaps and Output functionality for alignments and...
Definition: ConsensusXMLFile.h:58
OpenMS::Constants::UserParam::IIMN_LINKED_GROUPS
const std::string IIMN_LINKED_GROUPS
Definition: Constants.h:526