OpenMS  3.0.0
IsobaricQuantifier.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Stephan Aiche, Chris Bielow $
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34 
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
42  class IsobaricQuantitationMethod;
43  class ConsensusMap;
44 
51  class OPENMS_DLLAPI IsobaricQuantifier :
52  public DefaultParamHandler
53  {
54 public:
60  explicit IsobaricQuantifier(const IsobaricQuantitationMethod* const quant_method);
61 
64 
66  IsobaricQuantifier& operator=(const IsobaricQuantifier& rhs);
67 
77  void quantify(const ConsensusMap& consensus_map_in, ConsensusMap& consensus_map_out);
78 
79 protected:
81  void setDefaultParams_();
82 
84  void updateMembers_() override;
85 
86 private:
89 
92 
95 
98 
100  void computeLabelingStatistics_(ConsensusMap& consensus_map_out);
101  };
102 } // namespace
103 
DefaultParamHandler.h
OpenMS::IsobaricQuantifier
Given the extracted channel intensities the IsobaricQuantifier corrects and normalizes the intensitie...
Definition: IsobaricQuantifier.h:51
OpenMS::IsobaricQuantifier::quant_method_
const IsobaricQuantitationMethod * quant_method_
The quantification method used for the dataset to be analyzed.
Definition: IsobaricQuantifier.h:91
OpenMS::IsobaricQuantifier::isotope_correction_enabled_
bool isotope_correction_enabled_
Is true if isotope correction is enabled, false otherwise.
Definition: IsobaricQuantifier.h:94
OpenMS::IsobaricQuantifierStatistics
Statistics for quantitation performance and comparison of NNLS vs. naive method (aka matrix inversion...
Definition: IsobaricQuantifierStatistics.h:48
OpenMS::DefaultParamHandler
A base class for all classes handling default parameters.
Definition: DefaultParamHandler.h:92
IsobaricQuantifierStatistics.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::IsobaricQuantitationMethod
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:55
OpenMS::ConsensusMap
A container for consensus elements.
Definition: ConsensusMap.h:82
OpenMS::IsobaricQuantifier::normalization_enabled_
bool normalization_enabled_
Is true if normalization is enabled, false otherwise.
Definition: IsobaricQuantifier.h:97
OpenMS::IsobaricQuantifier::stats_
IsobaricQuantifierStatistics stats_
Stats of current quantitation run.
Definition: IsobaricQuantifier.h:88