OpenMS  3.0.0
LayerDataIdent.h
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34 
35 #pragma once
36 
39 
40 namespace OpenMS
41 {
42 
48  class OPENMS_GUI_DLLAPI LayerDataIdent : public LayerDataBase, public IPeptideIds
49  {
50  public:
53  LayerDataBase(LayerDataBase::DT_IDENT){};
55  LayerDataIdent(const LayerDataIdent& ld) = delete;
57  LayerDataIdent& operator=(const LayerDataIdent& ld) = delete;
59  LayerDataIdent(LayerDataIdent&& ld) = default;
61  LayerDataIdent& operator=(LayerDataIdent&& ld) = default;
62 
63  std::unique_ptr<Painter1DBase> getPainter1D() const override;
64 
65  void updateRanges() override
66  {
67  // nothing to do...
68  }
69 
70  RangeAllType getRange() const override
71  {
72  RangeAllType r;
73  for (const PeptideIdentification& pep : peptides_)
74  {
75  r.extendRT(pep.getRT());
76  r.extendMZ(pep.getMZ());
77  }
78  return r;
79  }
80 
81  std::unique_ptr<LayerStatistics> getStats() const override;
82 
83  virtual const PepIds& getPeptideIds() const override
84  {
85  return peptides_;
86  }
87  virtual PepIds& getPeptideIds() override
88  {
89  return peptides_;
90  }
91 
92  virtual void setPeptideIds(const PepIds& ids) override
93  {
94  peptides_ = ids;
95  }
96  virtual void setPeptideIds(PepIds&& ids) override
97  {
98  peptides_ = std::move(ids);
99  }
100 
101  private:
103  std::vector<PeptideIdentification> peptides_;
104  };
105 
106 }// namespace OpenMS
OpenMS::LayerDataIdent::getPeptideIds
virtual const PepIds & getPeptideIds() const override
get the peptide IDs for this layer
Definition: LayerDataIdent.h:83
OpenMS::LayerDataIdent::updateRanges
void updateRanges() override
Update ranges of the underlying data.
Definition: LayerDataIdent.h:65
OpenMS::LayerDataIdent::setPeptideIds
virtual void setPeptideIds(const PepIds &ids) override
overwrite the peptide IDs for this layer
Definition: LayerDataIdent.h:92
OpenMS::IPeptideIds
Abstract base class which defines an interface for PeptideIdentifications.
Definition: IPeptideIds.h:48
OpenMS::LayerDataIdent::getRange
RangeAllType getRange() const override
Definition: LayerDataIdent.h:70
OpenMS::LayerDataIdent::setPeptideIds
virtual void setPeptideIds(PepIds &&ids) override
Definition: LayerDataIdent.h:96
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::RangeManager
Handles the management of a multidimensional range, e.g. RangeMZ and RangeIntensity for spectra.
Definition: RangeManager.h:588
OpenMS::LayerDataIdent
Class that stores the data for one layer of type PeptideIdentifications.
Definition: LayerDataIdent.h:48
LayerDataBase.h
OpenMS::IPeptideIds::PepIds
std::vector< PeptideIdentification > PepIds
Definition: IPeptideIds.h:51
OpenMS::LayerDataIdent::peptides_
std::vector< PeptideIdentification > peptides_
peptide identifications
Definition: LayerDataIdent.h:103
OpenMS::PeptideIdentification
Represents the peptide hits for a spectrum.
Definition: PeptideIdentification.h:63
OpenMS::LayerDataIdent::LayerDataIdent
LayerDataIdent()
Default constructor.
Definition: LayerDataIdent.h:52
IPeptideIds.h
OpenMS::LayerDataIdent::getPeptideIds
virtual PepIds & getPeptideIds() override
Definition: LayerDataIdent.h:87
OpenMS::LayerDataBase
Class that stores the data for one layer.
Definition: LayerDataBase.h:97