OpenMS  3.0.0
MRMFeature.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
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34 
35 #pragma once
36 
37 #include <OpenMS/KERNEL/Feature.h>
39 
40 namespace OpenMS
41 {
50  class OPENMS_DLLAPI MRMFeature :
51  public Feature
52  {
53 public:
54 
56 
57  typedef std::vector<Feature> FeatureListType;
60 
62 
63  MRMFeature();
65 
67  MRMFeature(const MRMFeature &rhs);
68 
70  MRMFeature(MRMFeature &&rhs) = default;
71 
73  MRMFeature & operator=(const MRMFeature & rhs);
74 
76  MRMFeature& operator=(MRMFeature&&) & = default;
77 
79  ~MRMFeature() override;
81 
83 
84 
86  const OpenSwath_Scores & getScores() const;
87 
89  OpenSwath_Scores & getScores();
90 
92  Feature & getFeature(const String& key);
93 
95  const Feature & getFeature(const String& key) const;
96 
98  void setScores(const OpenSwath_Scores & scores);
99 
101  void addScore(const String & score_name, double score);
102 
104  void addFeature(const Feature & feature, const String& key);
105 
106  void addFeature(Feature && feature, const String& key);
107 
109  const std::vector<Feature> & getFeatures() const;
110 
112  void getFeatureIDs(std::vector<String> & result) const;
113 
115  void addPrecursorFeature(const Feature & feature, const String& key);
116 
117  void addPrecursorFeature(Feature && feature, const String& key);
118 
120  void getPrecursorFeatureIDs(std::vector<String> & result) const;
121 
123  Feature & getPrecursorFeature(String key);
124 
126  const Feature & getPrecursorFeature(String key) const;
127 
128  void IDScoresAsMetaValue(bool decoy, const OpenSwath_Ind_Scores& idscores);
130 
131 protected:
132 
134 
136 
139 
141  std::map<String, int> feature_map_;
142 
144  std::map<String, int> precursor_feature_map_;
145 
146  };
147 }
148 
149 
OpenMS::MRMFeature::precursor_feature_map_
std::map< String, int > precursor_feature_map_
map native ids to the precursor features
Definition: MRMFeature.h:144
OpenMS::String
A more convenient string class.
Definition: String.h:58
Feature.h
OpenMS::OpenSwath_Ind_Scores
Definition: OpenSwathScores.h:194
OpenMS::MRMFeature
A multi-chromatogram MRM feature.
Definition: MRMFeature.h:50
OpenMS::MRMFeature::precursor_features_
FeatureListType precursor_features_
Definition: MRMFeature.h:135
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::MRMFeature::FeatureListType
std::vector< Feature > FeatureListType
Type definitions.
Definition: MRMFeature.h:58
OpenMS::MRMFeature::features_
FeatureListType features_
Definition: MRMFeature.h:133
OpenMS::Feature
An LC-MS feature.
Definition: Feature.h:70
OpenMS::MRMFeature::feature_map_
std::map< String, int > feature_map_
map native ids to the features
Definition: MRMFeature.h:141
OpenMS::OpenSwath_Scores
A structure to hold the different scores computed by OpenSWATH.
Definition: OpenSwathScores.h:82
OpenMS::MRMFeature::pg_scores_
OpenSwath_Scores pg_scores_
peak group scores
Definition: MRMFeature.h:138
OpenSwathScores.h