OpenMS  3.0.0
MockObjects.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
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34 
35 #pragma once
36 
37 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
39 
40 #include <boost/shared_ptr.hpp>
41 #include <map>
42 #include <vector>
43 #include <string>
44 
45 namespace OpenSwath
46 {
47 
51  class OPENSWATHALGO_DLLAPI MockFeature :
52  public OpenSwath::IFeature
53  {
54 public:
55 
56  MockFeature();
57 
58  ~MockFeature() override;
59 
60  void getRT(std::vector<double>& rt) const override;
61 
62  void getIntensity(std::vector<double>& intens) const override;
63 
64  float getIntensity() const override;
65 
66  double getRT() const override;
67 
68  std::vector<double> m_rt_vec;
69  std::vector<double> m_intensity_vec;
70  float m_intensity;
71  double m_rt;
72  };
73 
77  class OPENSWATHALGO_DLLAPI MockMRMFeature :
79  {
80 public:
81 
83 
84  ~MockMRMFeature() override;
85 
86  boost::shared_ptr<OpenSwath::IFeature> getFeature(std::string nativeID) override;
87 
88  boost::shared_ptr<OpenSwath::IFeature> getPrecursorFeature(std::string nativeID) override;
89 
90  std::vector<std::string> getNativeIDs() const override;
91 
92  std::vector<std::string> getPrecursorIDs() const override;
93 
94  float getIntensity() const override;
95 
96  double getRT() const override;
97 
98  size_t size() const override;
99 
100  std::map<std::string, boost::shared_ptr<MockFeature> > m_features;
101  std::map<std::string, boost::shared_ptr<MockFeature> > m_precursor_features;
102  float m_intensity;
103  double m_rt;
104  };
105 
109  class OPENSWATHALGO_DLLAPI MockTransitionGroup :
111  {
112 public:
113 
115 
116  ~MockTransitionGroup() override;
117 
118  std::size_t size() const override;
119 
120  std::vector<std::string> getNativeIDs() const override;
121 
122  void getLibraryIntensities(std::vector<double>& intensities) const override;
123 
124  std::size_t m_size;
125  std::vector<std::string> m_native_ids;
126  std::vector<double> m_library_intensities;
127  };
128 
129 
133  class OPENSWATHALGO_DLLAPI MockSignalToNoise :
135  {
136 public:
138 
139  double getValueAtRT(double /* RT */) override;
140 
141  double m_sn_value;
142  };
143 
144 } //end namespace OpenMS
145 
OpenSwath::MockTransitionGroup::m_size
std::size_t m_size
Definition: MockObjects.h:124
OpenSwath::MockFeature::m_rt_vec
std::vector< double > m_rt_vec
Definition: MockObjects.h:68
ITransition.h
OpenSwath::MockMRMFeature::m_rt
double m_rt
Definition: MockObjects.h:103
OpenSwath
Definition: Scoring.h:43
OpenSwath::MockTransitionGroup
Mock object implementing ITransitionGroup.
Definition: MockObjects.h:109
OpenSwath::MockMRMFeature::m_precursor_features
std::map< std::string, boost::shared_ptr< MockFeature > > m_precursor_features
Definition: MockObjects.h:101
OpenSwath::MockFeature::m_intensity_vec
std::vector< double > m_intensity_vec
Definition: MockObjects.h:69
OpenSwath::MockMRMFeature::m_intensity
float m_intensity
Definition: MockObjects.h:102
OpenSwath::MockSignalToNoise
Mock object implementing ISignalToNoise.
Definition: MockObjects.h:133
OpenSwath::MockMRMFeature
Mock object implementing IMRMFeature.
Definition: MockObjects.h:77
OpenSwath::MockFeature::m_rt
double m_rt
Definition: MockObjects.h:71
OpenSwath::MockTransitionGroup::m_native_ids
std::vector< std::string > m_native_ids
Definition: MockObjects.h:125
OpenSwath::IFeature
Definition: ITransition.h:46
OpenSwath::MockTransitionGroup::m_library_intensities
std::vector< double > m_library_intensities
Definition: MockObjects.h:126
OpenSwath::MockSignalToNoise::m_sn_value
double m_sn_value
Definition: MockObjects.h:141
OpenSwath::MockFeature::m_intensity
float m_intensity
Definition: MockObjects.h:70
OpenSwath::MockMRMFeature::m_features
std::map< std::string, boost::shared_ptr< MockFeature > > m_features
Definition: MockObjects.h:100
OpenSwath::ITransitionGroup
Definition: ITransition.h:69
OpenSwath::MockFeature
Mock object implementing IFeature.
Definition: MockObjects.h:51
OpenSwath::ISignalToNoise
Definition: ITransition.h:77
OpenSwath::IMRMFeature
Definition: ITransition.h:56