OpenMS  3.0.0
MzMLSqliteSwathHandler.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest
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34 
35 #pragma once
36 
37 #include <OpenMS/CONCEPT/Types.h>
38 
41 
42 // forward declarations
43 struct sqlite3;
44 
45 namespace OpenMS
46 {
47 
48  namespace Internal
49  {
50 
59  class OPENMS_DLLAPI MzMLSqliteSwathHandler
60  {
61 
62 public:
63 
69  MzMLSqliteSwathHandler(const String& filename) :
70  filename_(filename)
71  {}
72 
79  std::vector<OpenSwath::SwathMap> readSwathWindows();
80 
86  std::vector<int> readMS1Spectra();
87 
95  std::vector<int> readSpectraForWindow(const OpenSwath::SwathMap & swath_map);
96 
97 protected:
98 
100 
101  /*
102  * These are spectra and chromatogram ids that are global for a specific
103  * database file. Keeping track of them allows us to append spectra and
104  * chromatograms multiple times to a database.
105  */
108 
109  };
110 
111 
112  } // namespace Internal
113 } // namespace OpenMS
114 
OpenMS::Internal::MzMLSqliteSwathHandler::chrom_id_
Int chrom_id_
Definition: MzMLSqliteSwathHandler.h:107
Types.h
SwathMap.h
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::Internal::MzMLSqliteSwathHandler::filename_
String filename_
Definition: MzMLSqliteSwathHandler.h:99
OpenMS::Internal::MzMLSqliteSwathHandler::MzMLSqliteSwathHandler
MzMLSqliteSwathHandler(const String &filename)
Constructor.
Definition: MzMLSqliteSwathHandler.h:69
OpenMS::Int
int Int
Signed integer type.
Definition: Types.h:102
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::Internal::MzMLSqliteSwathHandler
Sqlite handler for SWATH data sets.
Definition: MzMLSqliteSwathHandler.h:59
OpenSwath::SwathMap
Data structure to hold one SWATH map with information about upper / lower isolation window and whethe...
Definition: SwathMap.h:45
String.h
OpenMS::Internal::MzMLSqliteSwathHandler::spec_id_
Int spec_id_
Definition: MzMLSqliteSwathHandler.h:106