OpenMS  3.0.0
OpenSwathWorkflow.h File Reference
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Classes

struct  ChromExtractParams
 ChromatogramExtractor parameters. More...
 
class  OpenSwathWorkflowBase
 
class  OpenSwathCalibrationWorkflow
 Execute all steps for retention time and m/z calibration of SWATH-MS data. More...
 
class  OpenSwathWorkflow
 Execute all steps in an OpenSwath analysis. More...
 
class  OpenSwathWorkflowSonar
 Execute all steps in an OpenEcho analysis (OpenSwath for SONAR data) More...
 

Namespaces

 OpenMS
 Main OpenMS namespace.
 

Class Documentation

◆ OpenMS::ChromExtractParams

struct OpenMS::ChromExtractParams

ChromatogramExtractor parameters.

A small helper struct to pass the parameters for the chromatogram extraction through to the actual algorithm.

Collaboration diagram for ChromExtractParams:
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Class Members
double extra_rt_extract Whether to extract some extra in the retention time (can be useful if one wants to look at the chromatogram outside the window)
String extraction_function The extraction function in mass space.
double im_extraction_window Extraction window in ion mobility.
double min_upper_edge_dist Whether to not extract anything closer than this (in Da) from the upper edge.
double mz_extraction_window Extraction window in Da or ppm (e.g. 50ppm means extraction +/- 25ppm)
bool ppm Whether the extraction window is given in ppm or Da.
double rt_extraction_window The retention time extraction window.