OpenMS  3.0.0
PeakAlignment.h
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31 // $Maintainer: Mathias Walzer $
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35 #pragma once
36 
38 #include <vector>
39 
40 namespace OpenMS
41 {
42 
53  class OPENMS_DLLAPI PeakAlignment :
55  {
56 public:
57 
59  PeakAlignment();
60 
62  PeakAlignment(const PeakAlignment & source);
63 
65  ~PeakAlignment() override;
66 
68  PeakAlignment & operator=(const PeakAlignment & source);
69 
75  double operator()(const PeakSpectrum & spec1, const PeakSpectrum & spec2) const override;
76 
78  double operator()(const PeakSpectrum & spec) const override;
79 
81  static PeakSpectrumCompareFunctor * create() { return new PeakAlignment(); }
82 
84  static const String getProductName()
85  {
86  return "PeakAlignment";
87  }
88 
90  std::vector<std::pair<Size, Size> > getAlignmentTraceback(const PeakSpectrum & spec1, const PeakSpectrum & spec2) const;
91 
92 private:
93 
95  double peakPairScore_(double & pos1, double & intens1, double & pos2, double & intens2, const double & sigma) const;
96 
97 
98  };
99 
100 }
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::PeakSpectrumCompareFunctor
Base class for compare functors of spectra, that return a similarity value for two spectra.
Definition: PeakSpectrumCompareFunctor.h:52
OpenMS::PeakAlignment::getProductName
static const String getProductName()
get the identifier for this DefaultParamHandler
Definition: PeakAlignment.h:84
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
PeakSpectrumCompareFunctor.h
OpenMS::PeakAlignment
make a PeakAlignment of two PeakSpectra
Definition: PeakAlignment.h:53
OpenMS::PeakAlignment::create
static PeakSpectrumCompareFunctor * create()
Definition: PeakAlignment.h:81
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition: MSSpectrum.h:66