OpenMS  3.0.0
PepNovoOutfile.h
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31 // $Maintainer: Timo Sachsenberg $
32 // $Authors: Sandro Andreotti, Chris Bielow $
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34 
35 #pragma once
36 
40 
41 #include <vector>
42 #include <map>
43 
44 namespace OpenMS
45 {
46  class ProteinIdentification;
47 
56  class OPENMS_DLLAPI PepNovoOutfile
57  {
58 public:
59 
60  typedef std::map<Size, std::pair<double, double> > IndexPosMappingType;
61 
64 
66  PepNovoOutfile(const PepNovoOutfile & pepnovo_outfile);
67 
69  virtual ~PepNovoOutfile();
70 
72  PepNovoOutfile & operator=(const PepNovoOutfile & pepnovo_outfile);
73 
75  bool operator==(const PepNovoOutfile & pepnovo_outfile) const;
76 
89  void load(const std::string & result_filename, std::vector<PeptideIdentification> & peptide_identifications,
90  ProteinIdentification & protein_identification,
91  const double & score_threshold,
92  const IndexPosMappingType & id_rt_mz,
93  const std::map<String, String> & mod_id_map);
94 
102  void getSearchEngineAndVersion(const String & pepnovo_output_without_parameters_filename, ProteinIdentification & protein_identification);
103 
104  };
105 
106 } //namespace OpenMS
107 
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::PepNovoOutfile
Representation of a PepNovo output file.
Definition: PepNovoOutfile.h:56
OpenMS::ProteinIdentification
Representation of a protein identification run.
Definition: ProteinIdentification.h:70
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Exception.h
OpenMS::PepNovoOutfile::IndexPosMappingType
std::map< Size, std::pair< double, double > > IndexPosMappingType
Definition: PepNovoOutfile.h:60
OpenMS::Internal::operator==
bool operator==(const IDBoostGraph::ProteinGroup &lhs, const IDBoostGraph::ProteinGroup &rhs)
String.h
PeptideIdentification.h