OpenMS  3.0.0
SequenceVisualizer.h
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31 // $Maintainer: Julianus Pfeuffer $
32 // $Authors: Dhanmoni Nath, Julianus Pfeuffer $
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34 
35 #ifdef QT_WEBENGINEWIDGETS_LIB
36 #pragma once
37 
38 // OpenMS_GUI config
39 #include <OpenMS/VISUAL/OpenMS_GUIConfig.h>
40 
41 #include <QWidget>
42 #include <QJsonObject>
43 
44 class QWebEngineView;
45 class QWebChannel;
46 
47 namespace Ui
48 {
49  class SequenceVisualizer;
50 }
51 
52 namespace OpenMS
53 {
54  class OPENMS_GUI_DLLAPI Backend : public QObject
55  {
56  Q_OBJECT
57 
58  // We can access the protein and peptide data using SequenceVisualizer.json_data_obj inside JS/HTML resource file
59  Q_PROPERTY(QJsonObject json_data_obj MEMBER m_json_data_obj_ NOTIFY dataChanged_)
60  signals:
61  void dataChanged_();
62 
63  public:
64  QJsonObject m_json_data_obj_;
65  };
66 
67  class OPENMS_GUI_DLLAPI SequenceVisualizer : public QWidget
68  {
69  Q_OBJECT
70 
71  public:
72  explicit SequenceVisualizer(QWidget* parent = nullptr);
73  ~SequenceVisualizer() override;
74 
75 
76  public slots:
77  // this method sets protein and peptide data to m_json_data_obj_.
78  void setProteinPeptideDataToJsonObj(
79  const QString& accession_num,
80  const QString& pro_seq,
81  const QJsonArray& peptides_data);
82 
83  private:
84 
85  Ui::SequenceVisualizer* ui_;
86  Backend backend_;
87  QWebEngineView* view_;
88  QWebChannel* channel_;
89  };
90 }// namespace OpenMS
91 #endif
LogStream.h
QObject
OpenMS::TOPPBase
Base class for TOPP applications.
Definition: TOPPBase.h:147
Size
double
OpenMS::toString
const std::string & toString(const DriftTimeUnit value)
OpenMS::FASTAFile
This class serves for reading in and writing FASTA files If the protein/gene sequence contains unusua...
Definition: FASTAFile.h:60
OpenMS::Constants::k
const double k
Definition: Constants.h:153
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
IdXMLFile.h
QWidget
OpenMS::ProteinIdentification
Representation of a protein identification run.
Definition: ProteinIdentification.h:70
OpenMS::String::hasSubstring
bool hasSubstring(const String &string) const
true if String contains the string, false otherwise
OpenMS::IdXMLFile::load
void load(const String &filename, std::vector< ProteinIdentification > &protein_ids, std::vector< PeptideIdentification > &peptide_ids)
Loads the identifications of an idXML file without identifier.
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
Ui
Definition: SwathWizardBase.h:62
FASTAFile.h
ProteinIdentification.h
main
int main(int argc, const char **argv)
Definition: INIFileEditor.cpp:71
OPENMS_LOG_ERROR
#define OPENMS_LOG_ERROR
Macro to be used if non-fatal error are reported (processing continues)
Definition: LogStream.h:455
OpenMS::PeptideIdentification::getReferencingHits
static std::vector< PeptideHit > getReferencingHits(const std::vector< PeptideHit > &, const std::set< String > &accession)
returns all peptide hits which reference to a given protein accession (i.e. filter by protein accessi...
OpenMS::FASTAFile::load
void load(const String &filename, std::vector< FASTAEntry > &data) const
loads a FASTA file given by 'filename' and stores the information in 'data' This uses more RAM than r...
OpenMS::OpenMS_Log_info
Logger::LogStream OpenMS_Log_info
Global static instance of a LogStream to capture messages classified as information....
OpenMS::TOPPBase::ExitCodes
ExitCodes
Exit codes.
Definition: TOPPBase.h:152
TOPPBase.h
OpenMS::IdXMLFile
Used to load and store idXML files.
Definition: IdXMLFile.h:68