OpenMS  3.0.0
SpectrumAccessOpenMSCached.h
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34 
35 #pragma once
36 
41 
43 
45 
46 #include <fstream>
47 
48 namespace OpenMS
49 {
50 
64  class OPENMS_DLLAPI SpectrumAccessOpenMSCached :
66  public OpenMS::CachedmzML
67  {
68 
69 public:
72 
82  explicit SpectrumAccessOpenMSCached(const String& filename);
83 
87  ~SpectrumAccessOpenMSCached() override;
88 
91 
93  boost::shared_ptr<OpenSwath::ISpectrumAccess> lightClone() const override;
94 
95  OpenSwath::SpectrumPtr getSpectrumById(int id) override;
96 
97  OpenSwath::SpectrumMeta getSpectrumMetaById(int id) const override;
98 
99  std::vector<std::size_t> getSpectraByRT(double RT, double deltaRT) const override;
100 
101  size_t getNrSpectra() const override;
102 
103  SpectrumSettings getSpectraMetaInfo(int id) const;
104 
105  OpenSwath::ChromatogramPtr getChromatogramById(int id) override;
106 
107  size_t getNrChromatograms() const override;
108 
109  ChromatogramSettings getChromatogramMetaInfo(int id) const;
110 
111  std::string getChromatogramNativeID(int id) const override;
112  };
113 
114 } //end namespace
115 
OpenMS::String
A more convenient string class.
Definition: String.h:58
ISpectrumAccess.h
OpenMS::MSExperiment
In-Memory representation of a mass spectrometry run.
Definition: MSExperiment.h:70
OpenMS::CachedmzML
An class that uses on-disk caching to read and write spectra and chromatograms.
Definition: CachedMzML.h:53
CachedMzML.h
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::ChromatogramSettings
Representation of chromatogram settings, e.g. SRM/MRM chromatograms.
Definition: ChromatogramSettings.h:59
OpenMS::SpectrumAccessOpenMSCached::MSExperimentType
OpenMS::PeakMap MSExperimentType
Definition: SpectrumAccessOpenMSCached.h:70
OpenMS::SpectrumAccessOpenMSCached
An implementation of the Spectrum Access interface using on-disk caching.
Definition: SpectrumAccessOpenMSCached.h:64
MSExperiment.h
OpenSwath::OSSpectrumMeta
Identifying information for a spectrum.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:175
OpenSwath::ISpectrumAccess
The interface of a mass spectrometry experiment.
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/ISpectrumAccess.h:50
MSChromatogram.h
OpenMS::SpectrumAccessOpenMSCached::MSSpectrumType
OpenMS::MSSpectrum MSSpectrumType
Definition: SpectrumAccessOpenMSCached.h:71
OpenSwath::SpectrumPtr
boost::shared_ptr< Spectrum > SpectrumPtr
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:296
OpenMS::SpectrumSettings
Representation of 1D spectrum settings.
Definition: SpectrumSettings.h:63
OpenSwath::ChromatogramPtr
boost::shared_ptr< Chromatogram > ChromatogramPtr
Definition: openswathalgo/include/OpenMS/OPENSWATHALGO/DATAACCESS/DataStructures.h:172
OpenMS::MSSpectrum
The representation of a 1D spectrum.
Definition: MSSpectrum.h:66
OpenMS::DIM_UNIT::RT
RT in seconds.
StandardTypes.h
MSSpectrum.h