OpenMS  3.0.0
TMTElevenPlexQuantitationMethod.h
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34 
35 #pragma once
36 
37 #include <OpenMS/config.h>
38 
40 
41 namespace OpenMS
42 {
48  class OPENMS_DLLAPI TMTElevenPlexQuantitationMethod :
50  {
51 public:
54 
56  ~TMTElevenPlexQuantitationMethod() override = default;
57 
60 
63 
66 
67  const String& getMethodName() const override;
68 
69  const IsobaricChannelList& getChannelInformation() const override;
70 
71  Size getNumberOfChannels() const override;
72 
73  Matrix<double> getIsotopeCorrectionMatrix() const override;
74 
75  Size getReferenceChannel() const override;
76 
78 
79  private:
81  IsobaricChannelList channels_;
82 
84  static const String name_;
85 
88 
90  static const std::vector<std::string> channel_names_;
91 
92  protected:
94  void setDefaultParams_();
95 
97  void updateMembers_() override;
98 
99  };
100 } // namespace
101 
OpenMS::TMTElevenPlexQuantitationMethod::name_
static const String name_
The name of the quantitation method.
Definition: TMTElevenPlexQuantitationMethod.h:84
OpenMS::TMTElevenPlexQuantitationMethod::reference_channel_
Size reference_channel_
The reference channel for this experiment.
Definition: TMTElevenPlexQuantitationMethod.h:87
OpenMS::String
A more convenient string class.
Definition: String.h:58
OpenMS::Size
size_t Size
Size type e.g. used as variable which can hold result of size()
Definition: Types.h:127
OpenMS::TMTElevenPlexQuantitationMethod::channels_
IsobaricChannelList channels_
the actual information on the different tmt11plex channels.
Definition: TMTElevenPlexQuantitationMethod.h:81
OpenMS
Main OpenMS namespace.
Definition: FeatureDeconvolution.h:47
OpenMS::Matrix< double >
OpenMS::IsobaricQuantitationMethod
Abstract base class describing an isobaric quantitation method in terms of the used channels and an i...
Definition: IsobaricQuantitationMethod.h:55
OpenMS::TMTElevenPlexQuantitationMethod::channel_names_
static const std::vector< std::string > channel_names_
List of available channel names as they are presented to the user.
Definition: TMTElevenPlexQuantitationMethod.h:90
OpenMS::TMTElevenPlexQuantitationMethod
TMT 11plex quantitation to be used with the IsobaricQuantitation.
Definition: TMTElevenPlexQuantitationMethod.h:48
IsobaricQuantitationMethod.h