OpenMS  3.0.0
MSGFPlusAdapter

Adapter for the MS-GF+ protein identification (database search) engine.

pot. predecessor tools $ \longrightarrow $ MSGFPlusAdapter $ \longrightarrow $ pot. successor tools
PeakPickerHiRes
(or another centroiding tool)
IDFilter or
any protein/peptide processing tool

MS-GF+ must be installed before this wrapper can be used. Please make sure that Java and MS-GF+ are working.
At the time of writing, MS-GF+ can be downloaded from https://github.com/MSGFPlus/msgfplus/releases.

The following MS-GF+ version is required: MS-GF+ 2019/07/03. Older versions will not work properly, giving an error: [Error] Invalid parameter: -maxMissedCleavages.

Input spectra for MS-GF+ have to be centroided; profile spectra will raise an error in the adapter.

The first time MS-GF+ is applied to a database (FASTA file), it will index the file contents and generate a number of auxiliary files in the same directory as the database (e.g. for "db.fasta": "db.canno", "db.cnlap", "db.csarr" and "db.cseq" will be generated). It is advisable to keep these files for future MS-GF+ searches, to save the indexing step.

Note
When a new database is used for the first time, make sure to run only one MS-GF+ search against it! Otherwise one process will start the indexing and the others will crash due to incomplete index files. After a database has been indexed, multiple MS-GF+ processes can use it in parallel.

This adapter supports relative database filenames, which (when not found in the current working directory) are looked up in the directories specified by 'OpenMS.ini:id_db_dir' (see TOPP_advanced).

The adapter works in three steps to generate an idXML file: First MS-GF+ is run on the input MS data and the sequence database, producing an mzIdentML (.mzid) output file containing the search results. This file is then converted to a text file (.tsv) using MS-GF+' "MzIDToTsv" tool. Finally, the .tsv file is parsed and a result in idXML format is generated.

An optional MSGF+ configuration file can be added via '-conf' parameter. See https://github.com/MSGFPlus/msgfplus/blob/master/docs/examples/MSGFPlus_Params.txt for an example and consult the MSGF+ documentation for further details. Parameters specified in the configuration file are ignored by MS-GF+ if they are also specified on the command line. This adapter passes all flags which you can set on the command line, so use the configuration file only for parameters which are not available here (this includes fixed/variable modifications, which are passed on the commandline via -mod <file>). Thus, be very careful that your settings in '-conf' actually take effect (try running again without '-conf' file and test if the results change).

Note
This adapter supports 15N labeling by specifying the 20 AA modifications 'Label:15N(x)' as fixed modifications.

The command line parameters of this tool are:

MSGFPlusAdapter -- MS/MS database search using MS-GF+.
Full documentation: http://www.openms.de/doxygen/nightly/html/TOPP_MSGFPlusAdapter.html
Version: 3.0.0-pre-nightly-2022-07-20 Jul 21 2022, 00:07:28, Revision: ea0316e
To cite OpenMS:
  Rost HL, Sachsenberg T, Aiche S, Bielow C et al.. OpenMS: a flexible open-source software platform for mass spectrometry data analysis. Nat Meth. 2016; 13, 9: 741-748. doi:10.1038/nmeth.3959.

Usage:
  MSGFPlusAdapter <options>

Options (mandatory options marked with '*'):
  -in <file>*                                             Input file (MS-GF+ parameter '-s') (valid formats: 
                                                          'mzML', 'mzXML', 'mgf', 'ms2')
  -out <file>                                             Output file (valid formats: 'idXML')
  -mzid_out <file>                                        Alternative output file (MS-GF+ parameter '-o')
                                                          Either 'out' or 'mzid_out' are required. They can
                                                          be used together. (valid formats: 'mzid')
  -executable <file>*                                     The MSGFPlus Java archive file. Provide a full or 
                                                          relative path, or make sure it can be found in your
                                                          PATH environment.
  -database <file>*                                       Protein sequence database (FASTA file; MS-GF+ param
                                                          eter '-d'). Non-existing relative filenames are
                                                          looked up via 'OpenMS.ini:id_db_dir'. (valid format
                                                          s: 'FASTA')
  -precursor_mass_tolerance <value>                       Precursor monoisotopic mass tolerance (MS-GF+ param
                                                          eter '-t') (default: '10.0')
  -precursor_error_units <choice>                         Unit of precursor mass tolerance (MS-GF+ parameter 
                                                          '-t') (default: 'ppm' valid: 'Da', 'ppm')
  -isotope_error_range <range>                            Range of allowed isotope peak errors (MS-GF+ parame
                                                          ter '-ti'). Takes into account the error introduced
                                                          by choosing a non-monoisotopic peak for fragmentat
                                                          ion. Combined with 'precursor_mass_tolerance'/'prec
                                                          ursor_error_units', this determines the actual prec
                                                          ursor mass tolerance. E.g. for experimental mass
                                                          'exp' and calculated mass 'calc', '-precursor_mass_
                                                          tolerance 20 -precursor_error_units ppm -isotope_er
                                                          ror_range -1,2' tests '|exp - calc - n * 1.00335
                                                          Da| < 20 ppm' for n = -1, 0, 1, 2. (default: '0,1')
  -fragment_method <choice>                               Fragmentation method ('from_spectrum' relies on 
                                                          spectrum meta data and uses CID as fallback option;
                                                          MS-GF+ parameter '-m') (default: 'from_spectrum'
                                                          valid: 'from_spectrum', 'CID', 'ETD', 'HCD')
  -instrument <choice>                                    Instrument that generated the data ('low_res'/'high
                                                          _res' refer to LCQ and LTQ instruments; MS-GF+ para
                                                          meter '-inst') (default: 'low_res' valid: 'low_res'
                                                          , 'high_res', 'TOF', 'Q_Exactive')
  -enzyme <choice>                                        Enzyme used for digestion, or type of cleavage. 
                                                          Note: MS-GF+ does not support blocking rules. (MS-G
                                                          F+ parameter '-e') (default: 'Trypsin/P' valid:
                                                          'Alpha-lytic protease', 'Arg-C/P', 'Asp-N/B', 'Chym
                                                          otrypsin/P', 'Lys-C/P', 'Lys-N', 'Trypsin/P', 'glut
                                                          amyl endopeptidase', 'no cleavage', 'unspecific
                                                          cleavage')
  -protocol <choice>                                      Labeling or enrichment protocol used, if any (MS-GF
                                                          + parameter '-p') (default: 'automatic' valid: 'aut
                                                          omatic', 'phospho', 'iTRAQ', 'iTRAQ_phospho', 'TMT'
                                                          , 'none')
  -tryptic <choice>                                       Level of cleavage specificity required (MS-GF+ para
                                                          meter '-ntt') (default: 'fully' valid: 'non', 'semi
                                                          ', 'fully')
  -min_precursor_charge <num>                             Minimum precursor ion charge (only used for spectra
                                                          without charge information; MS-GF+ parameter '-min
                                                          Charge') (default: '2' min: '1')
  -max_precursor_charge <num>                             Maximum precursor ion charge (only used for spectra
                                                          without charge information; MS-GF+ parameter '-max
                                                          Charge') (default: '3' min: '1')
  -min_peptide_length <num>                               Minimum peptide length to consider (MS-GF+ paramete
                                                          r '-minLength') (default: '6' min: '1')
  -max_peptide_length <num>                               Maximum peptide length to consider (MS-GF+ paramete
                                                          r '-maxLength') (default: '40' min: '1')
  -matches_per_spec <num>                                 Number of matches per spectrum to be reported (MS-G
                                                          F+ parameter '-n') (default: '1' min: '1')
  -add_features <true/false>                              Output additional features (MS-GF+ parameter '-addF
                                                          eatures'). This is required by Percolator and hence
                                                          by default enabled. (default: 'true' valid: 'true'
                                                          , 'false')
  -max_mods <num>                                         Maximum number of modifications per peptide. If 
                                                          this value is large, the search may take very long.
                                                          (default: '2' min: '0')
  -max_missed_cleavages <num>                             Maximum number of missed cleavages allowed for a 
                                                          peptide to be considered for scoring. (default: -1
                                                          meaning unlimited) (default: '-1' min: '-1')
  -tasks <num>                                            (Override the number of tasks to use on the threads
                                                          ; Default: (internally calculated based on inputs))
                                                          More tasks than threads will reduce the memory
                                                          requirements of the search, but will be slower (how
                                                          much depends on the inputs).
                                                          1 <= tasks <= numThreads: will create one task
                                                          per thread, which is the original behavior.
                                                          tasks = 0: use default calculation - minimum of
                                                          ...
                                                          times as long. (default: '0')
  -fixed_modifications <mods>                             Fixed modifications, specified using Unimod (www.un
                                                          imod.org) terms, e.g. 'Carbamidomethyl (C)' or 'Oxi
                                                          dation (M)' (default: '[Carbamidomethyl (C)]' valid
                                                          : '15N-oxobutanoic (N-term C)', '15N-oxobutanoic
                                                          (Protein N-term S)', '15N-oxobutanoic (Protein N-te
                                                          rm T)', '2-dimethylsuccinyl (C)', '2-monomethylsucc
                                                          inyl (C)', '2-nitrobenzyl (Y)', '2-succinyl (C)',
                                                          '2HPG (R)', '3-deoxyglucosone (R)', '3-hydroxybenzy
                                                          ...
                                                          (K)')
  -variable_modifications <mods>                          Variable modifications, specified using Unimod (www
                                                          .unimod.org) terms, e.g. 'Carbamidomethyl (C)' or
                                                          'Oxidation (M)' (default: '[Oxidation (M)]' valid:
                                                          '15N-oxobutanoic (N-term C)', '15N-oxobutanoic (Pro
                                                          tein N-term S)', '15N-oxobutanoic (Protein N-term
                                                          T)', '2-dimethylsuccinyl (C)', '2-monomethylsucciny
                                                          l (C)', '2-nitrobenzyl (Y)', '2-succinyl (C)', '2HP
                                                          G (R)', '3-deoxyglucosone (R)', '3-hydroxybenzyl-ph
                                                          ...
                                                          (K)')
  -conf <file>                                            Optional MSGF+ configuration file (passed as -conf 
                                                          <file> to MSGF+). See documentation for examples.
                                                          Parameters of the adapter take precedence. Use conf
                                                          file only for settings not available here (for
                                                          example, any fixed/var modifications, in the conf
                                                          file will be ignored, since they are provided via
                                                          -mod flag)
  -java_executable <file>                                 The Java executable. Usually Java is on the system 
                                                          PATH. If Java is not found, use this parameter to
                                                          specify the full path to Java
  -java_memory <num>                                      Maximum Java heap size (in MB) (default: '3500')
  -reindex <choice>                                       Recalculate peptide to protein association using 
                                                          OpenMS. Annotates target-decoy information. (defaul
                                                          t: 'true' valid: 'true', 'false')

PeptideIndexing:
  -PeptideIndexing:allow_nterm_protein_cleavage <choice>  Allow the protein N-terminus amino acid to clip. 
                                                          (default: 'true' valid: 'true', 'false')

                                                          
Common TOPP options:
  -ini <file>                                             Use the given TOPP INI file
  -threads <n>                                            Sets the number of threads allowed to be used by 
                                                          the TOPP tool (default: '1')
  -write_ini <file>                                       Writes the default configuration file
  --help                                                  Shows options
  --helphelp                                              Shows all options (including advanced)

INI file documentation of this tool:

Legend:
required parameter
advanced parameter
+MSGFPlusAdapterMS/MS database search using MS-GF+.
version3.0.0-pre-nightly-2022-07-20 Version of the tool that generated this parameters file.
++1Instance '1' section for 'MSGFPlusAdapter'
in Input file (MS-GF+ parameter '-s')input file*.mzML,*.mzXML,*.mgf,*.ms2
out Output fileoutput file*.idXML
mzid_out Alternative output file (MS-GF+ parameter '-o')
Either 'out' or 'mzid_out' are required. They can be used together.
output file*.mzid
executableMSGFPlus.jar The MSGFPlus Java archive file. Provide a full or relative path, or make sure it can be found in your PATH environment.input file
database Protein sequence database (FASTA file; MS-GF+ parameter '-d'). Non-existing relative filenames are looked up via 'OpenMS.ini:id_db_dir'.input file*.FASTA
add_decoysfalse Create decoy proteins (reversed sequences) and append them to the database for the search (MS-GF+ parameter '-tda'). This allows the calculation of FDRs, but should only be used if the database does not already contain decoys.true,false
precursor_mass_tolerance10.0 Precursor monoisotopic mass tolerance (MS-GF+ parameter '-t')
precursor_error_unitsppm Unit of precursor mass tolerance (MS-GF+ parameter '-t')Da,ppm
isotope_error_range0,1 Range of allowed isotope peak errors (MS-GF+ parameter '-ti'). Takes into account the error introduced by choosing a non-monoisotopic peak for fragmentation. Combined with 'precursor_mass_tolerance'/'precursor_error_units', this determines the actual precursor mass tolerance. E.g. for experimental mass 'exp' and calculated mass 'calc', '-precursor_mass_tolerance 20 -precursor_error_units ppm -isotope_error_range -1,2' tests '|exp - calc - n * 1.00335 Da| < 20 ppm' for n = -1, 0, 1, 2.
fragment_methodfrom_spectrum Fragmentation method ('from_spectrum' relies on spectrum meta data and uses CID as fallback option; MS-GF+ parameter '-m')from_spectrum,CID,ETD,HCD
instrumentlow_res Instrument that generated the data ('low_res'/'high_res' refer to LCQ and LTQ instruments; MS-GF+ parameter '-inst')low_res,high_res,TOF,Q_Exactive
enzymeTrypsin/P Enzyme used for digestion, or type of cleavage. Note: MS-GF+ does not support blocking rules. (MS-GF+ parameter '-e')Alpha-lytic protease,Arg-C/P,Asp-N/B,Chymotrypsin/P,Lys-C/P,Lys-N,Trypsin/P,glutamyl endopeptidase,no cleavage,unspecific cleavage
protocolautomatic Labeling or enrichment protocol used, if any (MS-GF+ parameter '-p')automatic,phospho,iTRAQ,iTRAQ_phospho,TMT,none
trypticfully Level of cleavage specificity required (MS-GF+ parameter '-ntt')non,semi,fully
min_precursor_charge2 Minimum precursor ion charge (only used for spectra without charge information; MS-GF+ parameter '-minCharge')1:∞
max_precursor_charge3 Maximum precursor ion charge (only used for spectra without charge information; MS-GF+ parameter '-maxCharge')1:∞
min_peptide_length6 Minimum peptide length to consider (MS-GF+ parameter '-minLength')1:∞
max_peptide_length40 Maximum peptide length to consider (MS-GF+ parameter '-maxLength')1:∞
matches_per_spec1 Number of matches per spectrum to be reported (MS-GF+ parameter '-n')1:∞
add_featurestrue Output additional features (MS-GF+ parameter '-addFeatures'). This is required by Percolator and hence by default enabled.true,false
max_mods2 Maximum number of modifications per peptide. If this value is large, the search may take very long.0:∞
max_missed_cleavages-1 Maximum number of missed cleavages allowed for a peptide to be considered for scoring. (default: -1 meaning unlimited)-1:∞
tasks0 (Override the number of tasks to use on the threads; Default: (internally calculated based on inputs))
More tasks than threads will reduce the memory requirements of the search, but will be slower (how much depends on the inputs).
1 <= tasks <= numThreads: will create one task per thread, which is the original behavior.
tasks = 0: use default calculation - minimum of: (threads*3) and (numSpectra/250).
tasks < 0: multiply number of threads by abs(tasks) to determine number of tasks (i.e., -2 means "2 * numThreads" tasks).
One task per thread will use the most memory, but will usually finish the fastest.
2-3 tasks per thread will use comparably less memory, but may cause the search to take 1.5 to 2 times as long.
fixed_modifications[Carbamidomethyl (C)] Fixed modifications, specified using Unimod (www.unimod.org) terms, e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'15N-oxobutanoic (N-term C),15N-oxobutanoic (Protein N-term S),15N-oxobutanoic (Protein N-term T),2-dimethylsuccinyl (C),2-monomethylsuccinyl (C),2-nitrobenzyl (Y),2-succinyl (C),2HPG (R),3-deoxyglucosone (R),3-hydroxybenzyl-phosphate (K),3-hydroxybenzyl-phosphate (S),3-hydroxybenzyl-phosphate (T),3-hydroxybenzyl-phosphate (Y),3-phosphoglyceryl (K),3sulfo (N-term),4-ONE (C),4-ONE (H),4-ONE (K),4-ONE+Delta:H(-2)O(-1) (C),4-ONE+Delta:H(-2)O(-1) (H),4-ONE+Delta:H(-2)O(-1) (K),4AcAllylGal (C),a-type-ion (C-term),AccQTag (K),AccQTag (N-term),Acetyl (C),Acetyl (H),Acetyl (K),Acetyl (N-term),Acetyl (Protein N-term),Acetyl (R),Acetyl (S),Acetyl (T),Acetyl (Y),Acetyl:13C(2) (K),Acetyl:13C(2) (Protein N-term),Acetyl:2H(3) (H),Acetyl:2H(3) (K),Acetyl:2H(3) (N-term),Acetyl:2H(3) (Protein N-term),Acetyl:2H(3) (S),Acetyl:2H(3) (T),Acetyl:2H(3) (Y),Acetyldeoxyhypusine (K),Acetylhypusine (K),ADP-Ribosyl (C),ADP-Ribosyl (D),ADP-Ribosyl (E),ADP-Ribosyl (K),ADP-Ribosyl (N),ADP-Ribosyl (R),ADP-Ribosyl (S),ADP-Ribosyl (T),AEBS (H),AEBS (K),AEBS (Protein N-term),AEBS (S),AEBS (Y),AEC-MAEC (S),AEC-MAEC (T),AEC-MAEC:2H(4) (S),AEC-MAEC:2H(4) (T),AFB1_Dialdehyde (K),AHA-Alkyne (M),AHA-Alkyne-KDDDD (M),AHA-SS (M),AHA-SS_CAM (M),Ahx2+Hsl (C-term),Ala->Arg (A),Ala->Asn (A),Ala->Asp (A),Ala->Cys (A),Ala->Gln (A),Ala->Glu (A),Ala->Gly (A),Ala->His (A),Ala->Lys (A),Ala->Met (A),Ala->Phe (A),Ala->Pro (A),Ala->Ser (A),Ala->Thr (A),Ala->Trp (A),Ala->Tyr (A),Ala->Val (A),Ala->Xle (A),Amidated (C-term),Amidated (Protein C-term),Amidine (K),Amidine (N-term),Amidino (C),Amino (Y),Ammonia-loss (N),Ammonia-loss (N-term C),Ammonia-loss (Protein N-term S),Ammonia-loss (Protein N-term T),Ammonium (C-term),Ammonium (D),Ammonium (E),AMTzHexNAc2 (N),AMTzHexNAc2 (S),AMTzHexNAc2 (T),Andro-H2O (C),Archaeol (C),Arg (N-term),Arg->Ala (R),Arg->Asn (R),Arg->Asp (R),Arg->Cys (R),Arg->Gln (R),Arg->Glu (R),Arg->GluSA (R),Arg->Gly (R),Arg->His (R),Arg->Lys (R),Arg->Met (R),Arg->Npo (R),Arg->Orn (R),Arg->Phe (R),Arg->Pro (R),Arg->Ser (R),Arg->Thr (R),Arg->Trp (R),Arg->Tyr (R),Arg->Val (R),Arg->Xle (R),Arg-loss (C-term R),Arg2PG (R),Argbiotinhydrazide (R),AROD (C),Asn->Ala (N),Asn->Arg (N),Asn->Asp (N),Asn->Cys (N),Asn->Gln (N),Asn->Glu (N),Asn->Gly (N),Asn->His (N),Asn->Lys (N),Asn->Met (N),Asn->Phe (N),Asn->Pro (N),Asn->Ser (N),Asn->Thr (N),Asn->Trp (N),Asn->Tyr (N),Asn->Val (N),Asn->Xle (N),Asp->Ala (D),Asp->Arg (D),Asp->Asn (D),Asp->Cys (D),Asp->Gln (D),Asp->Glu (D),Asp->Gly (D),Asp->His (D),Asp->Lys (D),Asp->Met (D),Asp->Phe (D),Asp->Pro (D),Asp->Ser (D),Asp->Thr (D),Asp->Trp (D),Asp->Tyr (D),Asp->Val (D),Asp->Xle (D),Aspartylurea (H),Atto495Maleimide (C),AzidoF (F),azole (C),azole (S),Bacillosamine (N),BADGE (C),BDMAPP (H),BDMAPP (K),BDMAPP (Protein N-term),BDMAPP (W),BDMAPP (Y),BEMAD_C (C),BEMAD_C:2H(6) (C),BEMAD_ST (S),BEMAD_ST (T),BEMAD_ST:2H(6) (S),BEMAD_ST:2H(6) (T),Benzoyl (K),Benzoyl (N-term),benzylguanidine (K),betaFNA (C),betaFNA (K),BHT (C),BHT (H),BHT (K),BHTOH (C),BHTOH (H),BHTOH (K),Biotin (K),Biotin (N-term),Biotin-HPDP (C),Biotin-PEG-PRA (M),Biotin-PEO-Amine (D),Biotin-PEO-Amine (E),Biotin-PEO-Amine (Protein C-term),Biotin-phenacyl (C),Biotin-phenacyl (H),Biotin-phenacyl (S),Biotin-tyramide (Y),Biotin:Aha-DADPS (M),Biotin:Cayman-10013 (C),Biotin:Cayman-10141 (C),Biotin:Invitrogen-M1602 (C),Biotin:Sigma-B1267 (C),Biotin:Thermo-21325 (K),Biotin:Thermo-21328 (K),Biotin:Thermo-21328 (N-term),Biotin:Thermo-21330 (K),Biotin:Thermo-21330 (N-term),Biotin:Thermo-21345 (Q),Biotin:Thermo-21360 (X),Biotin:Thermo-21901+2H2O (C),Biotin:Thermo-21901+H2O (C),Biotin:Thermo-21911 (C),Biotin:Thermo-33033 (X),Biotin:Thermo-33033-H (X),Biotin:Thermo-88310 (K),Biotin:Thermo-88317 (S),Biotin:Thermo-88317 (Y),biotinAcrolein298 (C),biotinAcrolein298 (H),biotinAcrolein298 (K),biotinAcrolein298 (Protein N-term),BisANS (K),bisANS-sulfonates (K),bisANS-sulfonates (S),bisANS-sulfonates (T),BITC (C),BITC (K),BITC (N-term),BMP-piperidinol (C),BMP-piperidinol (M),Brij35 (N-term),Brij58 (N-term),Bromo (F),Bromo (H),Bromo (W),Bromo (Y),Bromobimane (C),Butyryl (K),C8-QAT (K),C8-QAT (N-term),CAF (N-term),CAMthiopropanoyl (K),CAMthiopropanoyl (Protein N-term),Can-FP-biotin (S),Can-FP-biotin (T),Can-FP-biotin (Y),Carbamidomethyl (C),Carbamidomethyl (D),Carbamidomethyl (E),Carbamidomethyl (H),Carbamidomethyl (K),Carbamidomethyl (M),Carbamidomethyl (N-term),Carbamidomethyl (S),Carbamidomethyl (T),Carbamidomethyl (U),Carbamidomethyl (Y),CarbamidomethylDTT (C),Carbamyl (C),Carbamyl (K),Carbamyl (M),Carbamyl (N-term),Carbamyl (Protein N-term),Carbamyl (R),Carbamyl (S),Carbamyl (T),Carbamyl (Y),Carbofuran (S),Carbonyl (A),Carbonyl (E),Carbonyl (I),Carbonyl (L),Carbonyl (Q),Carbonyl (R),Carbonyl (S),Carbonyl (V),Carboxy (D),Carboxy (E),Carboxy (K),Carboxy (Protein N-term M),Carboxy (W),Carboxy->Thiocarboxy (Protein C-term G),Carboxyethyl (H),Carboxyethyl (K),Carboxyethylpyrrole (K),Carboxymethyl (C),Carboxymethyl (K),Carboxymethyl (N-term),Carboxymethyl (U),Carboxymethyl (W),Carboxymethyl:13C(2) (C),CarboxymethylDMAP (N-term),CarboxymethylDTT (C),Cation:Ag (C-term),Cation:Ag (D),Cation:Ag (E),Cation:Al[III] (C-term),Cation:Al[III] (D),Cation:Al[III] (E),Cation:Ca[II] (C-term),Cation:Ca[II] (D),Cation:Ca[II] (E),Cation:Cu[I] (C-term),Cation:Cu[I] (D),Cation:Cu[I] (E),Cation:Cu[I] (H),Cation:Fe[II] (C-term),Cation:Fe[II] (D),Cation:Fe[II] (E),Cation:Fe[III] (C-term),Cation:Fe[III] (D),Cation:Fe[III] (E),Cation:K (C-term),Cation:K (D),Cation:K (E),Cation:Li (C-term),Cation:Li (D),Cation:Li (E),Cation:Mg[II] (C-term),Cation:Mg[II] (D),Cation:Mg[II] (E),Cation:Na (C-term),Cation:Na (D),Cation:Na (E),Cation:Ni[II] (C-term),Cation:Ni[II] (D),Cation:Ni[II] (E),Cation:Zn[II] (C-term),Cation:Zn[II] (D),Cation:Zn[II] (E),Cation:Zn[II] (H),cGMP (C),cGMP (S),cGMP+RMP-loss (C),cGMP+RMP-loss (S),CHDH (D),Chlorination (W),Chlorination (Y),Cholesterol (Protein C-term),CIGG (K),CLIP_TRAQ_2 (K),CLIP_TRAQ_2 (N-term),CLIP_TRAQ_2 (Y),CLIP_TRAQ_3 (K),CLIP_TRAQ_3 (N-term),CLIP_TRAQ_3 (Y),CLIP_TRAQ_4 (K),CLIP_TRAQ_4 (N-term),CLIP_TRAQ_4 (Y),CoenzymeA (C),Cresylphosphate (H),Cresylphosphate (K),Cresylphosphate (R),Cresylphosphate (S),Cresylphosphate (T),Cresylphosphate (Y),CresylSaligeninPhosphate (H),CresylSaligeninPhosphate (K),CresylSaligeninPhosphate (R),CresylSaligeninPhosphate (S),CresylSaligeninPhosphate (T),CresylSaligeninPhosphate (Y),Crotonaldehyde (C),Crotonaldehyde (H),Crotonaldehyde (K),Crotonyl (K),CuSMo (C),CUSTOM0 (A),CUSTOM0 (C),CUSTOM0 (C-term),CUSTOM0 (D),CUSTOM0 (E),CUSTOM0 (F),CUSTOM0 (G),CUSTOM0 (H),CUSTOM0 (I),CUSTOM0 (K),CUSTOM0 (L),CUSTOM0 (M),CUSTOM0 (N),CUSTOM0 (N-term),CUSTOM0 (P),CUSTOM0 (Q),CUSTOM0 (R),CUSTOM0 (S),CUSTOM0 (T),CUSTOM0 (V),CUSTOM0 (W),CUSTOM0 (Y),CUSTOM1 (A),CUSTOM1 (C),CUSTOM1 (C-term),CUSTOM1 (D),CUSTOM1 (E),CUSTOM1 (F),CUSTOM1 (G),CUSTOM1 (H),CUSTOM1 (I),CUSTOM1 (K),CUSTOM1 (L),CUSTOM1 (M),CUSTOM1 (N),CUSTOM1 (N-term),CUSTOM1 (P),CUSTOM1 (Q),CUSTOM1 (R),CUSTOM1 (S),CUSTOM1 (T),CUSTOM1 (V),CUSTOM1 (W),CUSTOM1 (Y),CUSTOM2 (A),CUSTOM2 (C),CUSTOM2 (C-term),CUSTOM2 (D),CUSTOM2 (E),CUSTOM2 (F),CUSTOM2 (G),CUSTOM2 (H),CUSTOM2 (I),CUSTOM2 (K),CUSTOM2 (L),CUSTOM2 (M),CUSTOM2 (N),CUSTOM2 (N-term),CUSTOM2 (P),CUSTOM2 (Q),CUSTOM2 (R),CUSTOM2 (S),CUSTOM2 (T),CUSTOM2 (V),CUSTOM2 (W),CUSTOM2 (Y),CUSTOM3 (A),CUSTOM3 (C),CUSTOM3 (C-term),CUSTOM3 (D),CUSTOM3 (E),CUSTOM3 (F),CUSTOM3 (G),CUSTOM3 (H),CUSTOM3 (I),CUSTOM3 (K),CUSTOM3 (L),CUSTOM3 (M),CUSTOM3 (N),CUSTOM3 (N-term),CUSTOM3 (P),CUSTOM3 (Q),CUSTOM3 (R),CUSTOM3 (S),CUSTOM3 (T),CUSTOM3 (V),CUSTOM3 (W),CUSTOM3 (Y),CUSTOM4 (A),CUSTOM4 (C),CUSTOM4 (C-term),CUSTOM4 (D),CUSTOM4 (E),CUSTOM4 (F),CUSTOM4 (G),CUSTOM4 (H),CUSTOM4 (I),CUSTOM4 (K),CUSTOM4 (L),CUSTOM4 (M),CUSTOM4 (N),CUSTOM4 (N-term),CUSTOM4 (P),CUSTOM4 (Q),CUSTOM4 (R),CUSTOM4 (S),CUSTOM4 (T),CUSTOM4 (V),CUSTOM4 (W),CUSTOM4 (Y),CUSTOM5 (A),CUSTOM5 (C),CUSTOM5 (C-term),CUSTOM5 (D),CUSTOM5 (E),CUSTOM5 (F),CUSTOM5 (G),CUSTOM5 (H),CUSTOM5 (I),CUSTOM5 (K),CUSTOM5 (L),CUSTOM5 (M),CUSTOM5 (N),CUSTOM5 (N-term),CUSTOM5 (P),CUSTOM5 (Q),CUSTOM5 (R),CUSTOM5 (S),CUSTOM5 (T),CUSTOM5 (V),CUSTOM5 (W),CUSTOM5 (Y),CUSTOM6 (A),CUSTOM6 (C),CUSTOM6 (C-term),CUSTOM6 (D),CUSTOM6 (E),CUSTOM6 (F),CUSTOM6 (G),CUSTOM6 (H),CUSTOM6 (I),CUSTOM6 (K),CUSTOM6 (L),CUSTOM6 (M),CUSTOM6 (N),CUSTOM6 (N-term),CUSTOM6 (P),CUSTOM6 (Q),CUSTOM6 (R),CUSTOM6 (S),CUSTOM6 (T),CUSTOM6 (V),CUSTOM6 (W),CUSTOM6 (Y),CUSTOM7 (A),CUSTOM7 (C),CUSTOM7 (C-term),CUSTOM7 (D),CUSTOM7 (E),CUSTOM7 (F),CUSTOM7 (G),CUSTOM7 (H),CUSTOM7 (I),CUSTOM7 (K),CUSTOM7 (L),CUSTOM7 (M),CUSTOM7 (N),CUSTOM7 (N-term),CUSTOM7 (P),CUSTOM7 (Q),CUSTOM7 (R),CUSTOM7 (S),CUSTOM7 (T),CUSTOM7 (V),CUSTOM7 (W),CUSTOM7 (Y),CUSTOM8 (A),CUSTOM8 (C),CUSTOM8 (C-term),CUSTOM8 (D),CUSTOM8 (E),CUSTOM8 (F),CUSTOM8 (G),CUSTOM8 (H),CUSTOM8 (I),CUSTOM8 (K),CUSTOM8 (L),CUSTOM8 (M),CUSTOM8 (N),CUSTOM8 (N-term),CUSTOM8 (P),CUSTOM8 (Q),CUSTOM8 (R),CUSTOM8 (S),CUSTOM8 (T),CUSTOM8 (V),CUSTOM8 (W),CUSTOM8 (Y),CUSTOM9 (A),CUSTOM9 (C),CUSTOM9 (C-term),CUSTOM9 (D),CUSTOM9 (E),CUSTOM9 (F),CUSTOM9 (G),CUSTOM9 (H),CUSTOM9 (I),CUSTOM9 (K),CUSTOM9 (L),CUSTOM9 (M),CUSTOM9 (N),CUSTOM9 (N-term),CUSTOM9 (P),CUSTOM9 (Q),CUSTOM9 (R),CUSTOM9 (S),CUSTOM9 (T),CUSTOM9 (V),CUSTOM9 (W),CUSTOM9 (Y),Cy3-maleimide (C),Cy3b-maleimide (C),Cyano (C),CyDye-Cy3 (C),CyDye-Cy5 (C),Cys->Ala (C),Cys->Arg (C),Cys->Asn (C),Cys->Asp (C),Cys->CamSec (C),Cys->Dha (C),Cys->ethylaminoAla (C),Cys->Gln (C),Cys->Glu (C),Cys->Gly (C),Cys->His (C),Cys->Lys (C),Cys->Met (C),Cys->methylaminoAla (C),Cys->Oxoalanine (C),Cys->Phe (C),Cys->Pro (C),Cys->PyruvicAcid (Protein N-term C),Cys->SecNEM (C),Cys->SecNEM:2H(5) (C),Cys->Ser (C),Cys->Thr (C),Cys->Trp (C),Cys->Tyr (C),Cys->Val (C),Cys->Xle (C),Cysteinyl (C),cysTMT (C),cysTMT6plex (C),Cytopiloyne (C),Cytopiloyne (K),Cytopiloyne (N-term),Cytopiloyne (P),Cytopiloyne (R),Cytopiloyne (S),Cytopiloyne (Y),Cytopiloyne+water (C),Cytopiloyne+water (K),Cytopiloyne+water (N-term),Cytopiloyne+water (R),Cytopiloyne+water (S),Cytopiloyne+water (T),Cytopiloyne+water (Y),DAET (S),DAET (T),Dansyl (K),Dansyl (N-term),Dap-DSP (A),Dap-DSP (E),Dap-DSP (K),Deamidated (N),Deamidated (Protein N-term F),Deamidated (Q),Deamidated (R),Deamidated:18O(1) (N),Deamidated:18O(1) (Q),Decanoyl (S),Decanoyl (T),Decarboxylation (D),Decarboxylation (E),DEDGFLYMVYASQETFG (K),Dehydrated (D),Dehydrated (N-term C),Dehydrated (Protein C-term N),Dehydrated (Protein C-term Q),Dehydrated (S),Dehydrated (T),Dehydrated (Y),Dehydro (C),Delta:H(-1)N(-1)18O(1) (N),Delta:H(-4)O(2) (W),Delta:H(-4)O(3) (W),Delta:H(10)C(8)O(1) (K),Delta:H(2)C(2) (H),Delta:H(2)C(2) (K),Delta:H(2)C(2) (N-term),Delta:H(2)C(2) (Protein N-term),Delta:H(2)C(3) (K),Delta:H(2)C(3)O(1) (K),Delta:H(2)C(3)O(1) (R),Delta:H(2)C(5) (K),Delta:H(4)C(2) (H),Delta:H(4)C(2) (K),Delta:H(4)C(2) (N-term),Delta:H(4)C(2)O(-1)S(1) (S),Delta:H(4)C(3) (H),Delta:H(4)C(3) (K),Delta:H(4)C(3) (Protein N-term),Delta:H(4)C(3)O(1) (C),Delta:H(4)C(3)O(1) (H),Delta:H(4)C(3)O(1) (K),Delta:H(4)C(3)O(1) (R),Delta:H(4)C(3)O(2) (K),Delta:H(4)C(5)O(1) (R),Delta:H(4)C(6) (K),Delta:H(5)C(2) (P),Delta:H(6)C(3)O(1) (C),Delta:H(6)C(3)O(1) (H),Delta:H(6)C(3)O(1) (K),Delta:H(6)C(3)O(1) (Protein N-term),Delta:H(6)C(6)O(1) (K),Delta:H(6)C(7)O(4) (R),Delta:H(8)C(6)O(1) (K),Delta:H(8)C(6)O(1) (Protein N-term),Delta:H(8)C(6)O(2) (K),Delta:Hg(1) (C),Delta:O(4) (W),Delta:S(-1)Se(1) (C),Delta:S(-1)Se(1) (M),Delta:Se(1) (C),Deoxy (D),Deoxy (S),Deoxy (T),Deoxyhypusine (K),Deoxyhypusine (Q),DeStreak (C),Dethiomethyl (M),dHex (N),dHex (S),dHex (T),dHex(1)Hex(1) (S),dHex(1)Hex(1) (T),dHex(1)Hex(1)HexA(1)HexNAc(3) (S),dHex(1)Hex(1)HexA(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(1)Kdn(1) (S),dHex(1)Hex(1)HexNAc(1)Kdn(1) (T),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Kdn(1) (S),dHex(1)Hex(1)HexNAc(2)Kdn(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3) (S),dHex(1)Hex(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(1)HexNAc(4) (S),dHex(1)Hex(1)HexNAc(4) (T),dHex(1)Hex(2) (S),dHex(1)Hex(2) (T),dHex(1)Hex(2)HexA(1) (S),dHex(1)Hex(2)HexA(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(2) (S),dHex(1)Hex(2)HexA(1)HexNAc(2) (T),dHex(1)Hex(2)HexNAc(1) (S),dHex(1)Hex(2)HexNAc(1) (T),dHex(1)Hex(2)HexNAc(1)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(1)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (N),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T),dHex(1)Hex(2)HexNAc(2)Pent(1) (N),dHex(1)Hex(2)HexNAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3) (N),dHex(1)Hex(2)HexNAc(3) (S),dHex(1)Hex(2)HexNAc(3) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)Sulf(1) (T),dHex(1)Hex(2)HexNAc(4) (N),dHex(1)Hex(2)HexNAc(4) (S),dHex(1)Hex(2)HexNAc(4) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(4)Sulf(2) (S),dHex(1)Hex(2)HexNAc(4)Sulf(2) (T),dHex(1)Hex(3) (S),dHex(1)Hex(3) (T),dHex(1)Hex(3)HexA(1)HexNAc(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(2) (S),dHex(1)Hex(3)HexA(1)HexNAc(2) (T),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexA(2)HexNAc(2) (S),dHex(1)Hex(3)HexA(2)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(1) (S),dHex(1)Hex(3)HexNAc(1) (T),dHex(1)Hex(3)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexNAc(2) (N),dHex(1)Hex(3)HexNAc(2) (S),dHex(1)Hex(3)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(3)HexNAc(2)Pent(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexNAc(3) (N),dHex(1)Hex(3)HexNAc(3) (S),dHex(1)Hex(3)HexNAc(3) (T),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(1)Hex(3)HexNAc(3)Pent(1) (N),dHex(1)Hex(3)HexNAc(3)Pent(2) (N),dHex(1)Hex(3)HexNAc(3)Pent(3) (N),dHex(1)Hex(3)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexNAc(4) (N),dHex(1)Hex(3)HexNAc(4) (S),dHex(1)Hex(3)HexNAc(4) (T),dHex(1)Hex(3)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(2) (N),dHex(1)Hex(3)HexNAc(4)Pent(3) (N),dHex(1)Hex(3)HexNAc(4)Sulf(1) (N),dHex(1)Hex(3)HexNAc(5) (N),dHex(1)Hex(3)HexNAc(5) (S),dHex(1)Hex(3)HexNAc(5) (T),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (S),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (T),dHex(1)Hex(3)HexNAc(5)Sulf(1) (N),dHex(1)Hex(3)HexNAc(6) (N),dHex(1)Hex(3)HexNAc(6) (S),dHex(1)Hex(3)HexNAc(6) (T),dHex(1)Hex(3)HexNAc(6)Sulf(1) (N),dHex(1)Hex(4) (S),dHex(1)Hex(4) (T),dHex(1)Hex(4)HexA(1) (S),dHex(1)Hex(4)HexA(1) (T),dHex(1)Hex(4)HexA(1)HexNAc(2) (S),dHex(1)Hex(4)HexA(1)HexNAc(2) (T),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(4)HexNAc(1)Pent(1) (N),dHex(1)Hex(4)HexNAc(2) (N),dHex(1)Hex(4)HexNAc(2) (S),dHex(1)Hex(4)HexNAc(2) (T),dHex(1)Hex(4)HexNAc(2)Pent(1) (N),dHex(1)Hex(4)HexNAc(3) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(4)HexNAc(3)Pent(1) (N),dHex(1)Hex(4)HexNAc(3)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4) (N),dHex(1)Hex(4)HexNAc(4) (S),dHex(1)Hex(4)HexNAc(4) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4)Pent(1) (N),dHex(1)Hex(4)HexNAc(4)Sulf(1) (N),dHex(1)Hex(4)HexNAc(5) (N),dHex(1)Hex(4)HexNAc(5)Sulf(1) (N),dHex(1)Hex(5) (S),dHex(1)Hex(5) (T),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2) (N),dHex(1)Hex(5)HexNAc(2) (N),dHex(1)Hex(5)HexNAc(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(3) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4) (N),dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N),dHex(1)Hex(5)HexNAc(4)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(2) (N),dHex(1)Hex(5)HexNAc(5) (N),dHex(1)Hex(6) (S),dHex(1)Hex(6) (T),dHex(1)Hex(6)HexNAc(2) (N),dHex(1)Hex(6)HexNAc(3) (N),dHex(1)Hex(6)HexNAc(3)Sulf(1) (N),dHex(1)Hex(6)HexNAc(4) (N),dHex(1)Hex(7)HexNAc(2) (N),dHex(1)Hex(7)HexNAc(3) (N),dHex(1)Hex(7)HexNAc(3)Phos(1) (N),dHex(1)Hex(7)HexNAc(3)Sulf(1) (N),dHex(1)Hex(7)HexNAc(4) (N),dHex(1)Hex(8)HexNAc(2) (N),dHex(1)HexNAc(3) (S),dHex(1)HexNAc(3) (T),dHex(1)HexNAc(4) (S),dHex(1)HexNAc(4) (T),dHex(1)HexNAc(5) (S),dHex(1)HexNAc(5) (T),dHex(2)Hex(1)HexNAc(1)Kdn(1) (S),dHex(2)Hex(1)HexNAc(1)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)Kdn(1) (S),dHex(2)Hex(1)HexNAc(2)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(1)HexNAc(3) (S),dHex(2)Hex(1)HexNAc(3) (T),dHex(2)Hex(1)HexNAc(4)Sulf(1) (S),dHex(2)Hex(1)HexNAc(4)Sulf(1) (T),dHex(2)Hex(2) (S),dHex(2)Hex(2) (T),dHex(2)Hex(2)HexA(1) (S),dHex(2)Hex(2)HexA(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(1) (S),dHex(2)Hex(2)HexNAc(1) (T),dHex(2)Hex(2)HexNAc(2) (N),dHex(2)Hex(2)HexNAc(2) (S),dHex(2)Hex(2)HexNAc(2) (T),dHex(2)Hex(2)HexNAc(2)Kdn(1) (S),dHex(2)Hex(2)HexNAc(2)Kdn(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(2) (S),dHex(2)Hex(2)HexNAc(2)Sulf(2) (T),dHex(2)Hex(2)HexNAc(3) (N),dHex(2)Hex(2)HexNAc(3) (S),dHex(2)Hex(2)HexNAc(3) (T),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(3)Sulf(1) (S),dHex(2)Hex(2)HexNAc(3)Sulf(1) (T),dHex(2)Hex(2)HexNAc(4) (S),dHex(2)Hex(2)HexNAc(4) (T),dHex(2)Hex(2)HexNAc(4)Sulf(2) (S),dHex(2)Hex(2)HexNAc(4)Sulf(2) (T),dHex(2)Hex(2)HexNAc(5) (S),dHex(2)Hex(2)HexNAc(5) (T),dHex(2)Hex(2)HexNAc(6)Sulf(1) (S),dHex(2)Hex(2)HexNAc(6)Sulf(1) (T),dHex(2)Hex(3) (S),dHex(2)Hex(3) (T),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexNAc(2) (N),dHex(2)Hex(3)HexNAc(2) (S),dHex(2)Hex(3)HexNAc(2) (T),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexNAc(3) (N),dHex(2)Hex(3)HexNAc(3) (S),dHex(2)Hex(3)HexNAc(3) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(2)Hex(3)HexNAc(3)Pent(1) (N),dHex(2)Hex(3)HexNAc(3)Pent(2) (N),dHex(2)Hex(3)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(4) (N),dHex(2)Hex(3)HexNAc(4) (S),dHex(2)Hex(3)HexNAc(4) (T),dHex(2)Hex(3)HexNAc(4)NeuAc(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(2) (N),dHex(2)Hex(3)HexNAc(5) (N),dHex(2)Hex(3)HexNAc(5) (S),dHex(2)Hex(3)HexNAc(5) (T),dHex(2)Hex(3)HexNAc(6) (N),dHex(2)Hex(4) (S),dHex(2)Hex(4) (T),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(4)HexNAc(1) (S),dHex(2)Hex(4)HexNAc(1) (T),dHex(2)Hex(4)HexNAc(2) (N),dHex(2)Hex(4)HexNAc(2) (S),dHex(2)Hex(4)HexNAc(2) (T),dHex(2)Hex(4)HexNAc(3) (N),dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(2)Hex(4)HexNAc(3)Pent(1) (N),dHex(2)Hex(4)HexNAc(4) (N),dHex(2)Hex(4)HexNAc(4) (S),dHex(2)Hex(4)HexNAc(4) (T),dHex(2)Hex(4)HexNAc(4)Pent(1) (N),dHex(2)Hex(4)HexNAc(4)Sulf(1) (N),dHex(2)Hex(4)HexNAc(5) (N),dHex(2)Hex(4)HexNAc(5) (S),dHex(2)Hex(4)HexNAc(5) (T),dHex(2)Hex(5)HexNAc(2)Me(1) (S),dHex(2)Hex(5)HexNAc(2)Me(1) (T),dHex(2)Hex(5)HexNAc(3)Pent(1) (N),dHex(2)Hex(5)HexNAc(4) (N),dHex(2)HexNAc(2)Kdn(1) (S),dHex(2)HexNAc(2)Kdn(1) (T),dHex(2)HexNAc(5) (S),dHex(2)HexNAc(5) (T),dHex(2)HexNAc(7) (S),dHex(2)HexNAc(7) (T),dHex(3)Hex(1)HexNAc(2)Kdn(1) (S),dHex(3)Hex(1)HexNAc(2)Kdn(1) (T),dHex(3)Hex(1)HexNAc(3)Kdn(1) (S),dHex(3)Hex(1)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(3)Hex(2)HexNAc(2) (S),dHex(3)Hex(2)HexNAc(2) (T),dHex(3)Hex(2)HexNAc(2)Kdn(1) (S),dHex(3)Hex(2)HexNAc(2)Kdn(1) (T),dHex(3)Hex(2)HexNAc(3) (S),dHex(3)Hex(2)HexNAc(3) (T),dHex(3)Hex(2)HexNAc(3)Kdn(1) (S),dHex(3)Hex(2)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexNAc(4) (S),dHex(3)Hex(2)HexNAc(4) (T),dHex(3)Hex(2)HexNAc(4)Sulf(2) (S),dHex(3)Hex(2)HexNAc(4)Sulf(2) (T),dHex(3)Hex(3)HexNAc(1) (S),dHex(3)Hex(3)HexNAc(1) (T),dHex(3)Hex(3)HexNAc(2) (S),dHex(3)Hex(3)HexNAc(2) (T),dHex(3)Hex(3)HexNAc(3) (S),dHex(3)Hex(3)HexNAc(3) (T),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(3)Hex(3)HexNAc(3)Pent(1) (N),dHex(3)Hex(3)HexNAc(4) (N),dHex(3)Hex(3)HexNAc(4)Pent(1) (N),dHex(3)Hex(4)HexNAc(4) (N),dHex(3)Hex(4)HexNAc(4) (S),dHex(3)Hex(4)HexNAc(4) (T),dHex(3)Hex(4)HexNAc(4)Sulf(1) (N),dHex(3)HexNAc(3)Kdn(1) (S),dHex(3)HexNAc(3)Kdn(1) (T),dHex(4)Hex(1)HexNAc(1)Kdn(2) (S),dHex(4)Hex(1)HexNAc(1)Kdn(2) (T),dHex(4)Hex(1)HexNAc(2)Kdn(1) (S),dHex(4)Hex(1)HexNAc(2)Kdn(1) (T),dHex(4)Hex(1)HexNAc(3)Kdn(1) (S),dHex(4)Hex(1)HexNAc(3)Kdn(1) (T),dHex(4)Hex(2)HexNAc(2)Kdn(1) (S),dHex(4)Hex(2)HexNAc(2)Kdn(1) (T),dHex(4)Hex(2)HexNAc(3) (S),dHex(4)Hex(2)HexNAc(3) (T),dHex(4)Hex(3)HexNAc(2)NeuAc(1) (S),dHex(4)Hex(3)HexNAc(2)NeuAc(1) (T),dHex(4)Hex(3)HexNAc(3) (S),dHex(4)Hex(3)HexNAc(3) (T),dHex(4)HexNAc(3)Kdn(1) (S),dHex(4)HexNAc(3)Kdn(1) (T),DHP (C),Diacylglycerol (C),DiART6plex (K),DiART6plex (N-term),DiART6plex (Protein N-term),DiART6plex (Y),DiART6plex115 (K),DiART6plex115 (N-term),DiART6plex115 (Protein N-term),DiART6plex115 (Y),DiART6plex116/119 (K),DiART6plex116/119 (N-term),DiART6plex116/119 (Protein N-term),DiART6plex116/119 (Y),DiART6plex117 (K),DiART6plex117 (N-term),DiART6plex117 (Protein N-term),DiART6plex117 (Y),DiART6plex118 (K),DiART6plex118 (N-term),DiART6plex118 (Protein N-term),DiART6plex118 (Y),Dibromo (Y),Dicarbamidomethyl (C),Dicarbamidomethyl (H),Dicarbamidomethyl (K),Dicarbamidomethyl (N-term),Dicarbamidomethyl (R),dichlorination (C),dichlorination (Y),Didehydro (C-term K),Didehydro (S),Didehydro (T),Didehydro (Y),Didehydroretinylidene (K),Diethyl (K),Diethyl (N-term),Diethylphosphate (C),Diethylphosphate (H),Diethylphosphate (K),Diethylphosphate (N-term),Diethylphosphate (S),Diethylphosphate (T),Diethylphosphate (Y),Diethylphosphothione (C),Diethylphosphothione (H),Diethylphosphothione (K),Diethylphosphothione (S),Diethylphosphothione (T),Diethylphosphothione (Y),Difuran (Y),Dihydroxyimidazolidine (R),Diiodo (H),Diiodo (Y),Diironsubcluster (C),Diisopropylphosphate (K),Diisopropylphosphate (N-term),Diisopropylphosphate (S),Diisopropylphosphate (T),Diisopropylphosphate (Y),DiLeu4plex (K),DiLeu4plex (N-term),DiLeu4plex (Y),DiLeu4plex115 (K),DiLeu4plex115 (N-term),DiLeu4plex115 (Y),DiLeu4plex117 (K),DiLeu4plex117 (N-term),DiLeu4plex117 (Y),DiLeu4plex118 (K),DiLeu4plex118 (N-term),DiLeu4plex118 (Y),Dimethyl (K),Dimethyl (N),Dimethyl (N-term),Dimethyl (Protein N-term P),Dimethyl (Protein N-term),Dimethyl (R),Dimethyl:2H(2)13C (K),Dimethyl:2H(2)13C (N),Dimethyl:2H(2)13C (N-term),Dimethyl:2H(2)13C (Protein N-term P),Dimethyl:2H(2)13C (R),Dimethyl:2H(4) (K),Dimethyl:2H(4) (N-term),Dimethyl:2H(4) (Protein N-term),Dimethyl:2H(4) (R),Dimethyl:2H(4)13C(2) (K),Dimethyl:2H(4)13C(2) (N-term),Dimethyl:2H(4)13C(2) (Protein N-term),Dimethyl:2H(4)13C(2) (R),Dimethyl:2H(6) (K),Dimethyl:2H(6) (N-term),Dimethyl:2H(6) (R),Dimethyl:2H(6)13C(2) (K),Dimethyl:2H(6)13C(2) (N-term),Dimethyl:2H(6)13C(2) (Protein N-term),Dimethyl:2H(6)13C(2) (R),DimethylamineGMBS (C),Dimethylaminoethyl (C),DimethylArsino (C),Dimethylphosphothione (C),Dimethylphosphothione (H),Dimethylphosphothione (K),Dimethylphosphothione (S),Dimethylphosphothione (T),Dimethylphosphothione (Y),DimethylpyrroleAdduct (K),Dioxidation (C),Dioxidation (E),Dioxidation (F),Dioxidation (I),Dioxidation (K),Dioxidation (L),Dioxidation (M),Dioxidation (P),Dioxidation (R),Dioxidation (U),Dioxidation (V),Dioxidation (W),Dioxidation (Y),Diphthamide (H),Dipyridyl (C),Dipyrrolylmethanemethyl (C),DMPO (C),DMPO (H),DMPO (Y),DNCB_hapten (C),DNCB_hapten (H),DNCB_hapten (K),DNCB_hapten (Y),dNIC (K),dNIC (N-term),DNPS (C),DNPS (W),DTT (C),DyLight-maleimide (C),DYn-2 (C),EDEDTIDVFQQQTGG (K),EDT-iodoacetyl-PEO-biotin (S),EDT-iodoacetyl-PEO-biotin (T),EDT-maleimide-PEO-biotin (S),EDT-maleimide-PEO-biotin (T),EEEDVIEVYQEQTGG (K),EGCG1 (C),EGCG2 (C),EHD-diphenylpentanone (C),EHD-diphenylpentanone (M),EQAT (C),EQAT:2H(5) (C),EQIGG (K),ESP (K),ESP (N-term),ESP:2H(10) (K),ESP:2H(10) (N-term),Ethanedithiol (S),Ethanedithiol (T),Ethanolamine (C),Ethanolamine (C-term),Ethanolamine (D),Ethanolamine (E),Ethanolyl (C),Ethanolyl (K),Ethanolyl (R),Ethyl (C-term),Ethyl (D),Ethyl (E),Ethyl (K),Ethyl (N-term),Ethyl (Protein N-term),Ethyl+Deamidated (N),Ethyl+Deamidated (Q),ethylamino (S),ethylamino (T),Ethylphosphate (K),Ethylphosphate (N-term),Ethylphosphate (S),Ethylphosphate (T),Ethylphosphate (Y),ethylsulfonylethyl (C),ethylsulfonylethyl (H),ethylsulfonylethyl (K),ExacTagAmine (K),ExacTagThiol (C),FAD (C),FAD (H),FAD (Y),Farnesyl (C),Fluorescein (C),Fluorescein-tyramine (Y),Fluoro (A),Fluoro (F),Fluoro (W),Fluoro (Y),FMN (S),FMN (T),FMNC (C),FMNH (C),FMNH (H),FNEM (C),Formyl (K),Formyl (N-term),Formyl (Protein N-term),Formyl (S),Formyl (T),Formylasparagine (H),FormylMet (Protein N-term),FP-Biotin (K),FP-Biotin (S),FP-Biotin (T),FP-Biotin (Y),FTC (C),FTC (K),FTC (P),FTC (R),FTC (S),Furan (Y),G-H1 (R),Galactosyl (K),Galactosyl (N-term),GEE (Q),GeranylGeranyl (C),GG (C),GG (K),GG (Protein N-term),GG (S),GG (T),GGQ (K),GIST-Quat (K),GIST-Quat (N-term),GIST-Quat:2H(3) (K),GIST-Quat:2H(3) (N-term),GIST-Quat:2H(6) (K),GIST-Quat:2H(6) (N-term),GIST-Quat:2H(9) (K),GIST-Quat:2H(9) (N-term),Gln->Ala (Q),Gln->Arg (Q),Gln->Asn (Q),Gln->Asp (Q),Gln->Cys (Q),Gln->Glu (Q),Gln->Gly (Q),Gln->His (Q),Gln->Lys (Q),Gln->Met (Q),Gln->Phe (Q),Gln->Pro (Q),Gln->pyro-Glu (N-term Q),Gln->Ser (Q),Gln->Thr (Q),Gln->Trp (Q),Gln->Tyr (Q),Gln->Val (Q),Gln->Xle (Q),Glu (E),Glu (Protein C-term),Glu+O(2) (H),Glu->Ala (E),Glu->Arg (E),Glu->Asn (E),Glu->Asp (E),Glu->Cys (E),Glu->Gln (E),Glu->Gly (E),Glu->His (E),Glu->Lys (E),Glu->Met (E),Glu->Phe (E),Glu->Pro (E),Glu->pyro-Glu (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E),Glu->Ser (E),Glu->Thr (E),Glu->Trp (E),Glu->Tyr (E),Glu->Val (E),Glu->Xle (E),glucosone (R),Glucosylgalactosyl (K),Glucuronyl (Protein N-term),Glucuronyl (S),Glucuronyl (T),GluGlu (E),GluGlu (Protein C-term),GluGluGlu (E),GluGluGlu (Protein C-term),GluGluGluGlu (E),GluGluGluGlu (Protein C-term),Gluratylation (K),Glutathione (C),Gly (K),Gly (S),Gly (T),Gly+O(2) (H),Gly->Ala (G),Gly->Arg (G),Gly->Asn (G),Gly->Asp (G),Gly->Cys (G),Gly->Gln (G),Gly->Glu (G),Gly->His (G),Gly->Lys (G),Gly->Met (G),Gly->Phe (G),Gly->Pro (G),Gly->Ser (G),Gly->Thr (G),Gly->Trp (G),Gly->Tyr (G),Gly->Val (G),Gly->Xle (G),Gly-loss+Amide (C-term G),Glycerophospho (S),GlycerylPE (E),glycidamide (K),glycidamide (N-term),Glycosyl (P),glyoxalAGE (R),GNLLFLACYCIGG (K),GPIanchor (Protein C-term),Guanidinyl (K),Guanidinyl (N-term),Haloxon (C),Haloxon (H),Haloxon (K),Haloxon (S),Haloxon (T),Haloxon (Y),HCysteinyl (C),HCysThiolactone (K),Heme (C),Heme (H),Hep (K),Hep (N),Hep (Q),Hep (R),Hep (S),Hep (T),Hex (C),Hex (K),Hex (N),Hex (N-term),Hex (R),Hex (S),Hex (T),Hex (W),Hex (Y),Hex(1)HexA(1) (S),Hex(1)HexA(1) (T),Hex(1)HexA(1)HexNAc(1) (S),Hex(1)HexA(1)HexNAc(1) (T),Hex(1)HexA(1)HexNAc(2) (S),Hex(1)HexA(1)HexNAc(2) (T),Hex(1)HexNAc(1) (N),Hex(1)HexNAc(1) (S),Hex(1)HexNAc(1) (T),Hex(1)HexNAc(1)dHex(1) (N),Hex(1)HexNAc(1)dHex(1) (S),Hex(1)HexNAc(1)dHex(1) (T),Hex(1)HexNAc(1)dHex(1)Me(1) (S),Hex(1)HexNAc(1)dHex(1)Me(1) (T),Hex(1)HexNAc(1)dHex(1)Me(2) (S),Hex(1)HexNAc(1)dHex(1)Me(2) (T),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(1) (N),Hex(1)HexNAc(1)NeuAc(1) (S),Hex(1)HexNAc(1)NeuAc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(2) (N),Hex(1)HexNAc(1)NeuAc(2) (S),Hex(1)HexNAc(1)NeuAc(2) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T),Hex(1)HexNAc(1)NeuAc(3) (S),Hex(1)HexNAc(1)NeuAc(3) (T),Hex(1)HexNAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuGc(2) (S),Hex(1)HexNAc(1)NeuGc(2) (T),Hex(1)HexNAc(1)NeuGc(3) (S),Hex(1)HexNAc(1)NeuGc(3) (T),Hex(1)HexNAc(1)NeuGc(4) (S),Hex(1)HexNAc(1)NeuGc(4) (T),Hex(1)HexNAc(1)NeuGc(5) (S),Hex(1)HexNAc(1)NeuGc(5) (T),Hex(1)HexNAc(1)Phos(1) (S),Hex(1)HexNAc(1)Phos(1) (T),Hex(1)HexNAc(1)Sulf(1) (S),Hex(1)HexNAc(1)Sulf(1) (T),Hex(1)HexNAc(2) (N),Hex(1)HexNAc(2) (S),Hex(1)HexNAc(2) (T),Hex(1)HexNAc(2)dHex(1) (N),Hex(1)HexNAc(2)dHex(1) (S),Hex(1)HexNAc(2)dHex(1) (T),Hex(1)HexNAc(2)dHex(1)Pent(1) (N),Hex(1)HexNAc(2)dHex(2) (N),Hex(1)HexNAc(2)dHex(2) (S),Hex(1)HexNAc(2)dHex(2) (T),Hex(1)HexNAc(2)dHex(2)Sulf(1) (S),Hex(1)HexNAc(2)dHex(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(1) (S),Hex(1)HexNAc(2)NeuAc(1) (T),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(2) (S),Hex(1)HexNAc(2)NeuAc(2) (T),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuGc(1) (S),Hex(1)HexNAc(2)NeuGc(1) (T),Hex(1)HexNAc(2)Pent(1) (N),Hex(1)HexNAc(2)Sulf(1) (S),Hex(1)HexNAc(2)Sulf(1) (T),Hex(1)HexNAc(3) (S),Hex(1)HexNAc(3) (T),Hex(1)HexNAc(3)NeuAc(1) (S),Hex(1)HexNAc(3)NeuAc(1) (T),Hex(1)HexNAc(3)NeuAc(2) (S),Hex(1)HexNAc(3)NeuAc(2) (T),Hex(1)HexNAc(3)NeuGc(1) (S),Hex(1)HexNAc(3)NeuGc(1) (T),Hex(1)HexNAc(3)Sulf(1) (S),Hex(1)HexNAc(3)Sulf(1) (T),Hex(1)HexNAc(4)dHex(1)Sulf(1) (S),Hex(1)HexNAc(4)dHex(1)Sulf(1) (T),Hex(1)NeuAc(1) (S),Hex(1)NeuAc(1) (T),Hex(1)NeuAc(1)Pent(1) (S),Hex(1)NeuAc(1)Pent(1) (T),Hex(1)NeuGc(1) (S),Hex(1)NeuGc(1) (T),Hex(1)Pent(1) (S),Hex(1)Pent(1) (T),Hex(1)Pent(2) (S),Hex(1)Pent(2) (T),Hex(1)Pent(2)Me(1) (S),Hex(1)Pent(2)Me(1) (T),Hex(1)Pent(3) (S),Hex(1)Pent(3) (T),Hex(1)Pent(3)Me(1) (S),Hex(1)Pent(3)Me(1) (T),Hex(10)HexNAc(1) (N),Hex(10)Phos(3) (S),Hex(10)Phos(3) (T),Hex(2) (K),Hex(2) (R),Hex(2) (S),Hex(2) (T),Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T),Hex(2)HexA(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)Pent(1)Sulf(1) (T),Hex(2)HexNAc(1) (N),Hex(2)HexNAc(1) (S),Hex(2)HexNAc(1) (T),Hex(2)HexNAc(1)Me(1) (S),Hex(2)HexNAc(1)Me(1) (T),Hex(2)HexNAc(1)NeuGc(1) (S),Hex(2)HexNAc(1)NeuGc(1) (T),Hex(2)HexNAc(1)NeuGc(2) (S),Hex(2)HexNAc(1)NeuGc(2) (T),Hex(2)HexNAc(1)NeuGc(3) (S),Hex(2)HexNAc(1)NeuGc(3) (T),Hex(2)HexNAc(1)NeuGc(4) (S),Hex(2)HexNAc(1)NeuGc(4) (T),Hex(2)HexNAc(1)Pent(1)HexA(1) (S),Hex(2)HexNAc(1)Pent(1)HexA(1) (T),Hex(2)HexNAc(1)Sulf(1) (S),Hex(2)HexNAc(1)Sulf(1) (T),Hex(2)HexNAc(2) (N),Hex(2)HexNAc(2) (S),Hex(2)HexNAc(2) (T),Hex(2)HexNAc(2)dHex(1) (N),Hex(2)HexNAc(2)dHex(1) (S),Hex(2)HexNAc(2)dHex(1) (T),Hex(2)HexNAc(2)NeuAc(1) (N),Hex(2)HexNAc(2)NeuAc(1) (S),Hex(2)HexNAc(2)NeuAc(1) (T),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(2)NeuAc(2) (S),Hex(2)HexNAc(2)NeuAc(2) (T),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(2)HexNAc(2)NeuGc(1) (S),Hex(2)HexNAc(2)NeuGc(1) (T),Hex(2)HexNAc(2)Pent(1) (N),Hex(2)HexNAc(2)Sulf(1) (S),Hex(2)HexNAc(2)Sulf(1) (T),Hex(2)HexNAc(3) (N),Hex(2)HexNAc(3) (S),Hex(2)HexNAc(3) (T),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(3)NeuAc(2) (S),Hex(2)HexNAc(3)NeuAc(2) (T),Hex(2)HexNAc(3)NeuAc(3) (S),Hex(2)HexNAc(3)NeuAc(3) (T),Hex(2)HexNAc(3)NeuGc(1) (S),Hex(2)HexNAc(3)NeuGc(1) (T),Hex(2)HexNAc(3)NeuGc(2) (S),Hex(2)HexNAc(3)NeuGc(2) (T),Hex(2)HexNAc(3)NeuGc(3) (S),Hex(2)HexNAc(3)NeuGc(3) (T),Hex(2)HexNAc(3)Sulf(1) (S),Hex(2)HexNAc(3)Sulf(1) (T),Hex(2)HexNAc(4) (N),Hex(2)HexNAc(4) (S),Hex(2)HexNAc(4) (T),Hex(2)HexNAc(4)NeuAc(1) (S),Hex(2)HexNAc(4)NeuAc(1) (T),Hex(2)HexNAc(5) (S),Hex(2)HexNAc(5) (T),Hex(2)NeuAc(1) (S),Hex(2)NeuAc(1) (T),Hex(2)Pent(2) (S),Hex(2)Pent(2) (T),Hex(2)Pent(2)Me(1) (S),Hex(2)Pent(2)Me(1) (T),Hex(2)Sulf(1) (S),Hex(2)Sulf(1) (T),Hex(3) (N),Hex(3) (S),Hex(3) (T),Hex(3)HexNAc(1) (N),Hex(3)HexNAc(1) (S),Hex(3)HexNAc(1) (T),Hex(3)HexNAc(1)HexA(1) (S),Hex(3)HexNAc(1)HexA(1) (T),Hex(3)HexNAc(1)Me(1) (S),Hex(3)HexNAc(1)Me(1) (T),Hex(3)HexNAc(1)Pent(1) (N),Hex(3)HexNAc(2) (N),Hex(3)HexNAc(2) (S),Hex(3)HexNAc(2) (T),Hex(3)HexNAc(2)NeuAc(1) (N),Hex(3)HexNAc(2)NeuAc(2) (S),Hex(3)HexNAc(2)NeuAc(2) (T),Hex(3)HexNAc(2)Pent(1) (N),Hex(3)HexNAc(2)Phos(1) (N),Hex(3)HexNAc(3) (N),Hex(3)HexNAc(3) (S),Hex(3)HexNAc(3) (T),Hex(3)HexNAc(3)NeuAc(1) (S),Hex(3)HexNAc(3)NeuAc(1) (T),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(2) (S),Hex(3)HexNAc(3)NeuAc(2) (T),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(3) (S),Hex(3)HexNAc(3)NeuAc(3) (T),Hex(3)HexNAc(3)NeuGc(1) (S),Hex(3)HexNAc(3)NeuGc(1) (T),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (T),Hex(3)HexNAc(3)Pent(1) (N),Hex(3)HexNAc(3)Sulf(1) (N),Hex(3)HexNAc(3)Sulf(1) (S),Hex(3)HexNAc(3)Sulf(1) (T),Hex(3)HexNAc(4) (N),Hex(3)HexNAc(4) (S),Hex(3)HexNAc(4) (T),Hex(3)HexNAc(4)NeuAc(1) (N),Hex(3)HexNAc(4)NeuAc(2) (N),Hex(3)HexNAc(4)Pent(1) (N),Hex(3)HexNAc(4)Sulf(1) (N),Hex(3)HexNAc(5) (N),Hex(3)HexNAc(5) (S),Hex(3)HexNAc(5) (T),Hex(3)HexNAc(5)NeuAc(1) (N),Hex(3)HexNAc(5)Sulf(1) (N),Hex(3)HexNAc(6) (N),Hex(3)HexNAc(6) (S),Hex(3)HexNAc(6) (T),Hex(3)HexNAc(6)NeuAc(1) (N),Hex(3)HexNAc(6)Sulf(1) (N),Hex(3)HexNAc(6)Sulf(2) (N),Hex(3)HexNAc(7) (N),Hex(3)HexNAc(7)Sulf(1) (N),Hex(4) (S),Hex(4) (T),Hex(4)HexA(1) (S),Hex(4)HexA(1) (T),Hex(4)HexA(1)HexNAc(1) (S),Hex(4)HexA(1)HexNAc(1) (T),Hex(4)HexNAc(1) (N),Hex(4)HexNAc(1) (S),Hex(4)HexNAc(1) (T),Hex(4)HexNAc(2) (N),Hex(4)HexNAc(2)NeuAc(1) (N),Hex(4)HexNAc(2)NeuAc(1) (S),Hex(4)HexNAc(2)NeuAc(1) (T),Hex(4)HexNAc(2)Pent(1) (N),Hex(4)HexNAc(3) (N),Hex(4)HexNAc(3) (S),Hex(4)HexNAc(3) (T),Hex(4)HexNAc(3)NeuAc(1) (N),Hex(4)HexNAc(3)NeuAc(1) (S),Hex(4)HexNAc(3)NeuAc(1) (T),Hex(4)HexNAc(3)NeuAc(2) (N),Hex(4)HexNAc(3)NeuGc(1) (N),Hex(4)HexNAc(3)Pent(1) (N),Hex(4)HexNAc(4) (N),Hex(4)HexNAc(4) (S),Hex(4)HexNAc(4) (T),Hex(4)HexNAc(4)Me(2)Pent(1) (N),Hex(4)HexNAc(4)NeuAc(1) (N),Hex(4)HexNAc(4)NeuAc(1) (S),Hex(4)HexNAc(4)NeuAc(1) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T),Hex(4)HexNAc(4)NeuGc(1) (N),Hex(4)HexNAc(4)NeuGc(1) (S),Hex(4)HexNAc(4)NeuGc(1) (T),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T),Hex(4)HexNAc(4)Pent(1) (N),Hex(4)HexNAc(4)Sulf(1) (N),Hex(4)HexNAc(4)Sulf(2) (S),Hex(4)HexNAc(4)Sulf(2) (T),Hex(4)HexNAc(5) (N),Hex(4)HexNAc(5)NeuAc(1) (N),Hex(4)HexNAc(5)Sulf(1) (N),Hex(4)HexNAc(6) (N),Hex(4)Phos(1) (S),Hex(4)Phos(1) (T),Hex(5) (S),Hex(5) (T),Hex(5)HexA(1) (S),Hex(5)HexA(1) (T),Hex(5)HexNAc(1) (N),Hex(5)HexNAc(1) (S),Hex(5)HexNAc(1) (T),Hex(5)HexNAc(2) (N),Hex(5)HexNAc(2)Phos(1) (N),Hex(5)HexNAc(3) (N),Hex(5)HexNAc(3)Pent(1) (N),Hex(5)HexNAc(4) (N),Hex(5)HexNAc(4) (S),Hex(5)HexNAc(4) (T),Hex(5)HexNAc(4)Me(2)Pent(1) (N),Hex(5)HexNAc(4)NeuAc(1) (N),Hex(5)HexNAc(4)NeuAc(1)Ac(1) (N),Hex(5)HexNAc(4)NeuAc(1)Ac(2) (N),Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N),Hex(5)HexNAc(4)NeuAc(2) (N),Hex(5)HexNAc(4)NeuGc(1) (N),Hex(5)HexNAc(4)Sulf(1) (N),Hex(5)HexNAc(5) (N),Hex(5)HexNAc(5) (S),Hex(5)HexNAc(5) (T),Hex(5)Phos(1) (S),Hex(5)Phos(1) (T),Hex(5)Phos(3) (S),Hex(5)Phos(3) (T),Hex(6)HexNAc(1) (N),Hex(6)HexNAc(2) (N),Hex(6)HexNAc(2)Phos(1) (N),Hex(6)HexNAc(3) (N),Hex(6)HexNAc(3)Phos(1) (N),Hex(6)HexNAc(4) (N),Hex(6)HexNAc(4) (S),Hex(6)HexNAc(4) (T),Hex(6)HexNAc(4)Me(3) (N),Hex(6)HexNAc(4)Me(3)Pent(1) (N),Hex(6)HexNAc(5) (N),Hex(6)HexNAc(5)NeuAc(3) (N),Hex(6)Phos(1) (S),Hex(6)Phos(1) (T),Hex(6)Phos(3) (S),Hex(6)Phos(3) (T),Hex(7)HexNAc(1) (N),Hex(7)HexNAc(2) (N),Hex(7)HexNAc(2)Phos(1) (N),Hex(7)HexNAc(2)Phos(2) (N),Hex(7)HexNAc(3) (N),Hex(7)HexNAc(3)Phos(1) (N),Hex(7)HexNAc(4) (N),Hex(7)HexNAc(6) (N),Hex(7)HexNAc(6) (S),Hex(7)HexNAc(6) (T),Hex(7)Phos(3) (S),Hex(7)Phos(3) (T),Hex(8)HexNAc(1) (N),Hex(8)HexNAc(2) (N),Hex(8)Phos(3) (S),Hex(8)Phos(3) (T),Hex(9) (N),Hex(9)HexNAc(1) (N),Hex(9)HexNAc(2) (N),Hex(9)Phos(3) (S),Hex(9)Phos(3) (T),HexA(2)HexNAc(3) (S),HexA(2)HexNAc(3) (T),HexN (K),HexN (N),HexN (S),HexN (T),HexN (W),HexNAc (C),HexNAc (N),HexNAc (S),HexNAc (T),HexNAc(1)dHex(1) (N),HexNAc(1)dHex(1) (S),HexNAc(1)dHex(1) (T),HexNAc(1)dHex(2) (N),HexNAc(1)Kdn(2) (S),HexNAc(1)Kdn(2) (T),HexNAc(1)NeuAc(1) (S),HexNAc(1)NeuAc(1) (T),HexNAc(1)NeuGc(1) (S),HexNAc(1)NeuGc(1) (T),HexNAc(1)NeuGc(2) (S),HexNAc(1)NeuGc(2) (T),HexNAc(2) (N),HexNAc(2) (S),HexNAc(2) (T),HexNAc(2)dHex(1) (N),HexNAc(2)dHex(2) (N),HexNAc(2)NeuAc(1) (S),HexNAc(2)NeuAc(1) (T),HexNAc(2)NeuAc(1)Sulf(1) (S),HexNAc(2)NeuAc(1)Sulf(1) (T),HexNAc(2)NeuGc(1) (S),HexNAc(2)NeuGc(1) (T),HexNAc(2)Sulf(1) (S),HexNAc(2)Sulf(1) (T),HexNAc(3) (S),HexNAc(3) (T),HexNAc(3)Sulf(1) (S),HexNAc(3)Sulf(1) (T),HexNAc(4) (S),HexNAc(4) (T),HexNAc(5) (S),HexNAc(5) (T),His+O(2) (H),His->Ala (H),His->Arg (H),His->Asn (H),His->Asp (H),His->Cys (H),His->Gln (H),His->Glu (H),His->Gly (H),His->Lys (H),His->Met (H),His->Phe (H),His->Pro (H),His->Ser (H),His->Thr (H),His->Trp (H),His->Tyr (H),His->Val (H),His->Xle (H),HMVK (C),HN2_mustard (C),HN2_mustard (H),HN2_mustard (K),HN3_mustard (C),HN3_mustard (H),HN3_mustard (K),HNE (A),HNE (C),HNE (H),HNE (K),HNE (L),HNE+Delta:H(2) (C),HNE+Delta:H(2) (H),HNE+Delta:H(2) (K),HNE-BAHAH (C),HNE-BAHAH (H),HNE-BAHAH (K),HNE-Delta:H(2)O (C),HNE-Delta:H(2)O (H),HNE-Delta:H(2)O (K),Homocysteic_acid (M),HPG (R),Hydroxamic_acid (D),Hydroxamic_acid (E),Hydroxycinnamyl (C),Hydroxyfarnesyl (C),Hydroxyheme (E),hydroxyisobutyryl (K),Hydroxymethyl (N),HydroxymethylOP (K),Hydroxytrimethyl (K),Hypusine (K),IASD (C),IBTP (C),ICAT-C (C),ICAT-C:13C(9) (C),ICAT-D (C),ICAT-D:2H(8) (C),ICAT-G (C),ICAT-G:2H(8) (C),ICAT-H (C),ICAT-H:13C(6) (C),ICDID (C),ICDID:2H(6) (C),ICPL (K),ICPL (N-term),ICPL (Protein N-term),ICPL:13C(6) (K),ICPL:13C(6) (N-term),ICPL:13C(6) (Protein N-term),ICPL:13C(6)2H(4) (K),ICPL:13C(6)2H(4) (N-term),ICPL:13C(6)2H(4) (Protein N-term),ICPL:2H(4) (K),ICPL:2H(4) (N-term),ICPL:2H(4) (Protein N-term),IDEnT (C),IED-Biotin (C),IGBP (C),IGBP:13C(2) (C),IMEHex(2)NeuAc(1) (K),IMID (K),IMID:2H(4) (K),Iminobiotin (K),Iminobiotin (N-term),Iodo (H),Iodo (Y),Iodoacetanilide (C),Iodoacetanilide (K),Iodoacetanilide (N-term),Iodoacetanilide:13C(6) (C),Iodoacetanilide:13C(6) (K),Iodoacetanilide:13C(6) (N-term),iodoTMT (C),iodoTMT (D),iodoTMT (E),iodoTMT (H),iodoTMT (K),iodoTMT6plex (C),iodoTMT6plex (D),iodoTMT6plex (E),iodoTMT6plex (H),iodoTMT6plex (K),IodoU-AMP (F),IodoU-AMP (W),IodoU-AMP (Y),ISD_z+2_ion (N-term),Isopropylphospho (S),Isopropylphospho (T),Isopropylphospho (Y),iTRAQ4plex (C),iTRAQ4plex (H),iTRAQ4plex (K),iTRAQ4plex (N-term),iTRAQ4plex (Protein N-term),iTRAQ4plex (S),iTRAQ4plex (T),iTRAQ4plex (Y),iTRAQ4plex114 (C),iTRAQ4plex114 (K),iTRAQ4plex114 (N-term),iTRAQ4plex114 (Y),iTRAQ4plex115 (C),iTRAQ4plex115 (K),iTRAQ4plex115 (N-term),iTRAQ4plex115 (Y),iTRAQ8plex (C),iTRAQ8plex (H),iTRAQ8plex (K),iTRAQ8plex (N-term),iTRAQ8plex (Protein N-term),iTRAQ8plex (S),iTRAQ8plex (T),iTRAQ8plex (Y),iTRAQ8plex:13C(6)15N(2) (C),iTRAQ8plex:13C(6)15N(2) (K),iTRAQ8plex:13C(6)15N(2) (N-term),iTRAQ8plex:13C(6)15N(2) (Y),Kdo (S),Kdo (T),Label:13C(1)2H(3) (M),Label:13C(1)2H(3)+Oxidation (M),Label:13C(2)15N(2) (K),Label:13C(3) (A),Label:13C(3)15N(1) (A),Label:13C(3)15N(1) (S),Label:13C(4) (M),Label:13C(4)+Oxidation (M),Label:13C(4)15N(1) (D),Label:13C(4)15N(2)+GG (K),Label:13C(5) (P),Label:13C(5)15N(1) (E),Label:13C(5)15N(1) (M),Label:13C(5)15N(1) (P),Label:13C(5)15N(1) (V),Label:13C(6) (I),Label:13C(6) (K),Label:13C(6) (L),Label:13C(6) (R),Label:13C(6)+Acetyl (K),Label:13C(6)+Dimethyl (K),Label:13C(6)+GG (K),Label:13C(6)15N(1) (I),Label:13C(6)15N(1) (L),Label:13C(6)15N(2) (K),Label:13C(6)15N(2)+Acetyl (K),Label:13C(6)15N(2)+Dimethyl (K),Label:13C(6)15N(2)+GG (K),Label:13C(6)15N(4) (R),Label:13C(6)15N(4)+Dimethyl (R),Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R),Label:13C(6)15N(4)+Methyl (R),Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R),Label:13C(9) (F),Label:13C(9) (Y),Label:13C(9)+Phospho (Y),Label:13C(9)15N(1) (F),Label:15N(1) (A),Label:15N(1) (C),Label:15N(1) (D),Label:15N(1) (E),Label:15N(1) (F),Label:15N(1) (G),Label:15N(1) (I),Label:15N(1) (L),Label:15N(1) (M),Label:15N(1) (P),Label:15N(1) (S),Label:15N(1) (T),Label:15N(1) (V),Label:15N(1) (Y),Label:15N(2) (K),Label:15N(2) (N),Label:15N(2) (Q),Label:15N(2) (W),Label:15N(2)2H(9) (K),Label:15N(3) (H),Label:15N(4) (R),Label:18O(1) (C-term),Label:18O(1) (S),Label:18O(1) (T),Label:18O(1) (Y),Label:18O(2) (C-term),Label:2H(10) (L),Label:2H(3) (L),Label:2H(3) (M),Label:2H(3)+Oxidation (M),Label:2H(4) (A),Label:2H(4) (F),Label:2H(4) (K),Label:2H(4) (U),Label:2H(4) (Y),Label:2H(4)+Acetyl (K),Label:2H(4)+GG (K),Label:2H(4)13C(1) (R),Label:2H(6)15N(1) (P),Label:2H(7)15N(4) (R),Label:2H(9)13C(6)15N(2) (K),lapachenole (C),Leu->MetOx (L),LG-anhydrolactam (K),LG-anhydrolactam (N-term),LG-anhyropyrrole (K),LG-anhyropyrrole (N-term),LG-Hlactam-K (K),LG-Hlactam-K (Protein N-term),LG-Hlactam-R (R),LG-lactam-K (K),LG-lactam-K (Protein N-term),LG-lactam-R (R),LG-pyrrole (C),LG-pyrrole (K),LG-pyrrole (N-term),Lipoyl (K),LRGG (K),LRGG+dimethyl (K),LRGG+methyl (K),LTX+Lophotoxin (Y),Lys (N-term),Lys+O(2) (H),Lys->Ala (K),Lys->Allysine (K),Lys->AminoadipicAcid (K),Lys->Arg (K),Lys->Asn (K),Lys->Asp (K),Lys->CamCys (K),Lys->Cys (K),Lys->Gln (K),Lys->Glu (K),Lys->Gly (K),Lys->His (K),Lys->Met (K),Lys->MetOx (K),Lys->Phe (K),Lys->Pro (K),Lys->Ser (K),Lys->Thr (K),Lys->Trp (K),Lys->Tyr (K),Lys->Val (K),Lys->Xle (K),Lys-loss (Protein C-term K),Lysbiotinhydrazide (K),maleimide (C),maleimide (K),Maleimide-PEO2-Biotin (C),maleimide3 (C),maleimide3 (K),maleimide5 (C),maleimide5 (K),Malonyl (C),Malonyl (K),Malonyl (S),MBS+peptide (C),MDCC (C),MeMePhosphorothioate (S),Menadione (C),Menadione (K),Menadione-HQ (C),Menadione-HQ (K),MercaptoEthanol (S),MercaptoEthanol (T),MesitylOxide (H),MesitylOxide (K),MesitylOxide (Protein N-term),Met+O(2) (H),Met->Aha (M),Met->Ala (M),Met->Arg (M),Met->Asn (M),Met->Asp (M),Met->AspSA (M),Met->Cys (M),Met->Gln (M),Met->Glu (M),Met->Gly (M),Met->His (M),Met->Hpg (M),Met->Hse (C-term M),Met->Hsl (C-term M),Met->Lys (M),Met->Phe (M),Met->Pro (M),Met->Ser (M),Met->Thr (M),Met->Trp (M),Met->Tyr (M),Met->Val (M),Met->Xle (M),Met-loss (Protein N-term M),Met-loss+Acetyl (Protein N-term M),Methamidophos-O (C),Methamidophos-O (H),Methamidophos-O (K),Methamidophos-O (S),Methamidophos-O (T),Methamidophos-O (Y),Methamidophos-S (C),Methamidophos-S (H),Methamidophos-S (K),Methamidophos-S (S),Methamidophos-S (T),Methamidophos-S (Y),Methyl (C),Methyl (C-term),Methyl (D),Methyl (E),Methyl (H),Methyl (I),Methyl (K),Methyl (L),Methyl (N),Methyl (N-term),Methyl (Protein N-term),Methyl (Q),Methyl (R),Methyl (S),Methyl (T),Methyl+Acetyl:2H(3) (K),Methyl+Deamidated (N),Methyl+Deamidated (Q),Methyl-PEO12-Maleimide (C),Methyl:2H(2) (K),Methyl:2H(2) (N-term),Methyl:2H(2)13C (C),Methyl:2H(2)13C (C-term),Methyl:2H(2)13C (D),Methyl:2H(2)13C (E),Methyl:2H(2)13C (H),Methyl:2H(2)13C (I),Methyl:2H(2)13C (K),Methyl:2H(2)13C (L),Methyl:2H(2)13C (N),Methyl:2H(2)13C (N-term),Methyl:2H(2)13C (Protein N-term),Methyl:2H(2)13C (Q),Methyl:2H(2)13C (R),Methyl:2H(2)13C (S),Methyl:2H(2)13C (T),Methyl:2H(3) (D),Methyl:2H(3) (E),Methyl:2H(3) (K),Methyl:2H(3) (R),Methyl:2H(3) (X),Methyl:2H(3)+Acetyl:2H(3) (K),Methyl:2H(3)13C(1) (K),Methyl:2H(3)13C(1) (N-term),Methyl:2H(3)13C(1) (R),Methylamine (S),Methylamine (T),Methylmalonylation (S),methylol (K),methylol (W),methylol (Y),Methylphosphonate (S),Methylphosphonate (T),Methylphosphonate (Y),Methylpyrroline (K),methylsulfonylethyl (C),methylsulfonylethyl (H),methylsulfonylethyl (K),Methylthio (C),Methylthio (D),Methylthio (K),Methylthio (N),Methylthio (N-term),MG-H1 (R),Microcin (Protein C-term),MicrocinC7 (Protein C-term),MM-diphenylpentanone (C),Molybdopterin (C),MolybdopterinGD (C),MolybdopterinGD (D),MolybdopterinGD (U),MolybdopterinGD+Delta:S(-1)Se(1) (C),monomethylphosphothione (C),monomethylphosphothione (H),monomethylphosphothione (K),monomethylphosphothione (S),monomethylphosphothione (T),monomethylphosphothione (Y),mTRAQ (H),mTRAQ (K),mTRAQ (N-term),mTRAQ (S),mTRAQ (T),mTRAQ (Y),mTRAQ:13C(3)15N(1) (H),mTRAQ:13C(3)15N(1) (K),mTRAQ:13C(3)15N(1) (N-term),mTRAQ:13C(3)15N(1) (S),mTRAQ:13C(3)15N(1) (T),mTRAQ:13C(3)15N(1) (Y),mTRAQ:13C(6)15N(2) (H),mTRAQ:13C(6)15N(2) (K),mTRAQ:13C(6)15N(2) (N-term),mTRAQ:13C(6)15N(2) (S),mTRAQ:13C(6)15N(2) (T),mTRAQ:13C(6)15N(2) (Y),MTSL (C),MurNAc (A),Myristoleyl (Protein N-term G),Myristoyl (C),Myristoyl (K),Myristoyl (N-term G),Myristoyl+Delta:H(-4) (Protein N-term G),N-dimethylphosphate (S),NA-LNO2 (C),NA-LNO2 (H),NA-OA-NO2 (C),NA-OA-NO2 (H),NBS (W),NBS:13C(6) (W),NDA (K),NDA (N-term),NEIAA (C),NEIAA (Y),NEIAA:2H(5) (C),NEIAA:2H(5) (Y),NEM:2H(5) (C),NEM:2H(5)+H2O (C),NEMsulfur (C),NEMsulfurWater (C),Nethylmaleimide (C),Nethylmaleimide+water (C),Nethylmaleimide+water (K),NeuAc (N),NeuAc (S),NeuAc (T),NeuGc (N),NeuGc (S),NeuGc (T),NHS-fluorescein (K),NHS-LC-Biotin (K),NHS-LC-Biotin (N-term),NIC (K),NIC (N-term),NIPCAM (C),Nitrene (Y),Nitro (F),Nitro (W),Nitro (Y),Nitrosyl (C),Nitrosyl (Y),Nmethylmaleimide (C),Nmethylmaleimide (K),Nmethylmaleimide+water (C),NO_SMX_SEMD (C),NO_SMX_SIMD (C),NP40 (N-term),NQIGG (K),O-Dimethylphosphate (S),O-Dimethylphosphate (T),O-Dimethylphosphate (Y),O-Et-N-diMePhospho (S),O-Isopropylmethylphosphonate (S),O-Isopropylmethylphosphonate (T),O-Isopropylmethylphosphonate (Y),O-Methylphosphate (S),O-Methylphosphate (T),O-Methylphosphate (Y),O-pinacolylmethylphosphonate (H),O-pinacolylmethylphosphonate (K),O-pinacolylmethylphosphonate (S),O-pinacolylmethylphosphonate (T),O-pinacolylmethylphosphonate (Y),Octanoyl (C),Octanoyl (S),Octanoyl (T),OxArgBiotin (R),OxArgBiotinRed (R),Oxidation (C),Oxidation (C-term G),Oxidation (D),Oxidation (E),Oxidation (F),Oxidation (H),Oxidation (I),Oxidation (K),Oxidation (L),Oxidation (M),Oxidation (N),Oxidation (P),Oxidation (Q),Oxidation (R),Oxidation (S),Oxidation (T),Oxidation (U),Oxidation (V),Oxidation (W),Oxidation (Y),Oxidation+NEM (C),OxLysBiotin (K),OxLysBiotinRed (K),OxProBiotin (P),OxProBiotinRed (P),Palmitoleyl (C),Palmitoleyl (S),Palmitoleyl (T),Palmitoyl (C),Palmitoyl (K),Palmitoyl (Protein N-term),Palmitoyl (S),Palmitoyl (T),PEITC (C),PEITC (K),PEITC (N-term),Pent(1)HexNAc(1) (S),Pent(1)HexNAc(1) (T),Pent(2) (S),Pent(2) (T),Pentose (S),Pentose (T),Pentylamine (Q),PEO-Iodoacetyl-LC-Biotin (C),PET (S),PET (T),Phe->Ala (F),Phe->Arg (F),Phe->Asn (F),Phe->Asp (F),Phe->CamCys (F),Phe->Cys (F),Phe->Gln (F),Phe->Glu (F),Phe->Gly (F),Phe->His (F),Phe->Lys (F),Phe->Met (F),Phe->Pro (F),Phe->Ser (F),Phe->Thr (F),Phe->Trp (F),Phe->Tyr (F),Phe->Val (F),Phe->Xle (F),phenyl-phosphate (K),phenyl-phosphate (S),phenyl-phosphate (T),phenyl-phosphate (Y),Phenylisocyanate (N-term),Phenylisocyanate:2H(5) (N-term),phenylsulfonylethyl (C),Phospho (C),Phospho (D),Phospho (E),Phospho (H),Phospho (K),Phospho (R),Phospho (S),Phospho (T),Phospho (Y),Phosphoadenosine (H),Phosphoadenosine (K),Phosphoadenosine (S),Phosphoadenosine (T),Phosphoadenosine (Y),PhosphoCytidine (S),PhosphoCytidine (T),PhosphoCytidine (Y),Phosphogluconoylation (K),Phosphogluconoylation (N-term),Phosphoguanosine (H),Phosphoguanosine (K),PhosphoHex (S),PhosphoHex (T),PhosphoHex(2) (N),PhosphoHex(2) (S),PhosphoHex(2) (T),PhosphoHexNAc (S),PhosphoHexNAc (T),Phosphopantetheine (S),Phosphopropargyl (S),Phosphopropargyl (T),Phosphopropargyl (Y),phosphoRibosyl (D),phosphoRibosyl (E),phosphoRibosyl (R),PhosphoribosyldephosphoCoA (S),PhosphoUridine (H),PhosphoUridine (Y),Phycocyanobilin (C),Phycoerythrobilin (C),Phytochromobilin (C),Piperidine (K),Piperidine (N-term),Pro+O(2) (H),Pro->Ala (P),Pro->Arg (P),Pro->Asn (P),Pro->Asp (P),Pro->Cys (P),Pro->Gln (P),Pro->Glu (P),Pro->Gly (P),Pro->HAVA (P),Pro->His (P),Pro->Lys (P),Pro->Met (P),Pro->Phe (P),Pro->pyro-Glu (P),Pro->Pyrrolidinone (P),Pro->Pyrrolidone (P),Pro->Ser (P),Pro->Thr (P),Pro->Trp (P),Pro->Tyr (P),Pro->Val (P),Pro->Xle (P),probiotinhydrazide (P),Propargylamine (C-term),Propargylamine (D),Propargylamine (E),Propionamide (C),Propionamide (K),Propionamide (N-term),Propionamide:2H(3) (C),Propionyl (K),Propionyl (N-term),Propionyl (Protein N-term),Propionyl (S),Propionyl (T),Propionyl:13C(3) (K),Propionyl:13C(3) (N-term),Propiophenone (C),Propiophenone (H),Propiophenone (K),Propiophenone (R),Propiophenone (S),Propiophenone (T),Propiophenone (W),Propyl (C-term),Propyl (D),Propyl (E),Propyl (K),Propyl (N-term),Propyl (Protein C-term),Propyl:2H(6) (K),Propyl:2H(6) (N-term),PropylNAGthiazoline (C),PS_Hapten (C),PS_Hapten (H),PS_Hapten (K),pupylation (K),Puromycin (C-term),PyMIC (N-term),PyridoxalPhosphate (K),PyridoxalPhosphateH2 (K),Pyridylacetyl (K),Pyridylacetyl (N-term),Pyridylethyl (C),Pyro-carbamidomethyl (N-term C),pyrophospho (S),pyrophospho (T),PyruvicAcidIminyl (K),PyruvicAcidIminyl (Protein N-term C),PyruvicAcidIminyl (Protein N-term V),QAT (C),QAT:2H(3) (C),QEQTGG (K),QQQTGG (K),QTGG (K),Quinone (W),Quinone (Y),RBS-ID_Uridine (A),RBS-ID_Uridine (C),RBS-ID_Uridine (D),RBS-ID_Uridine (E),RBS-ID_Uridine (F),RBS-ID_Uridine (G),RBS-ID_Uridine (H),RBS-ID_Uridine (I),RBS-ID_Uridine (K),RBS-ID_Uridine (L),RBS-ID_Uridine (M),RBS-ID_Uridine (N),RBS-ID_Uridine (P),RBS-ID_Uridine (Q),RBS-ID_Uridine (R),RBS-ID_Uridine (S),RBS-ID_Uridine (T),RBS-ID_Uridine (V),RBS-ID_Uridine (W),RBS-ID_Uridine (Y),Retinylidene (K),RNPXL (N-term K),RNPXL (N-term R),RNPXlink1 (C),s-GlcNAc (S),s-GlcNAc (T),Saligenin (H),Saligenin (K),Ser->Ala (S),Ser->Arg (S),Ser->Asn (S),Ser->Asp (S),Ser->Cys (S),Ser->Gln (S),Ser->Glu (S),Ser->Gly (S),Ser->His (S),Ser->LacticAcid (Protein N-term S),Ser->Lys (S),Ser->Met (S),Ser->Phe (S),Ser->Pro (S),Ser->Thr (S),Ser->Trp (S),Ser->Tyr (S),Ser->Val (S),Ser->Xle (S),serotonylation (Q),shTMT (K),shTMT (N-term),shTMT (Protein N-term),shTMTpro (K),shTMTpro (N-term),shTMTpro (Protein N-term),SMA (K),SMA (N-term),spermidine (Q),spermine (Q),SPITC (K),SPITC (N-term),SPITC:13C(6) (K),SPITC:13C(6) (N-term),Succinyl (K),Succinyl (N-term),Succinyl (Protein N-term),Succinyl:13C(4) (K),Succinyl:13C(4) (N-term),Succinyl:2H(4) (K),Succinyl:2H(4) (N-term),SulfanilicAcid (C-term),SulfanilicAcid (D),SulfanilicAcid (E),SulfanilicAcid:13C(6) (C-term),SulfanilicAcid:13C(6) (D),SulfanilicAcid:13C(6) (E),Sulfide (C),Sulfide (D),Sulfide (W),Sulfo (C),Sulfo (S),Sulfo (T),Sulfo (Y),sulfo+amino (Y),Sulfo-NHS-LC-LC-Biotin (K),Sulfo-NHS-LC-LC-Biotin (N-term),SulfoGMBS (C),SulfurDioxide (C),SUMO2135 (K),SUMO3549 (K),TAMRA-FP (S),TAMRA-FP (Y),Thiadiazole (C),Thiazolidine (C),Thiazolidine (F),Thiazolidine (H),Thiazolidine (K),Thiazolidine (Protein N-term),Thiazolidine (R),Thiazolidine (W),Thiazolidine (Y),thioacylPA (K),Thiophos-S-S-biotin (S),Thiophos-S-S-biotin (T),Thiophos-S-S-biotin (Y),Thiophospho (S),Thiophospho (T),Thiophospho (Y),Thr->Ala (T),Thr->Arg (T),Thr->Asn (T),Thr->Asp (T),Thr->Cys (T),Thr->Gln (T),Thr->Glu (T),Thr->Gly (T),Thr->His (T),Thr->Lys (T),Thr->Met (T),Thr->Phe (T),Thr->Pro (T),Thr->Ser (T),Thr->Trp (T),Thr->Tyr (T),Thr->Val (T),Thr->Xle (T),Thrbiotinhydrazide (T),Thyroxine (Y),TMAB (K),TMAB (N-term),TMAB:2H(9) (K),TMAB:2H(9) (N-term),TMPP-Ac (K),TMPP-Ac (N-term),TMPP-Ac (Y),TMPP-Ac:13C(9) (K),TMPP-Ac:13C(9) (N-term),TMPP-Ac:13C(9) (Y),TMT (H),TMT (K),TMT (N-term),TMT (Protein N-term),TMT (S),TMT (T),TMT2plex (H),TMT2plex (K),TMT2plex (N-term),TMT2plex (Protein N-term),TMT2plex (S),TMT2plex (T),TMT6plex (H),TMT6plex (K),TMT6plex (N-term),TMT6plex (Protein N-term),TMT6plex (S),TMT6plex (T),TMTpro (H),TMTpro (K),TMTpro (N-term),TMTpro (Protein N-term),TMTpro (S),TMTpro (T),TMTpro_zero (H),TMTpro_zero (K),TMTpro_zero (N-term),TMTpro_zero (Protein N-term),TMTpro_zero (S),TMTpro_zero (T),TNBS (K),TNBS (N-term),trifluoro (L),Triiodo (Y),Triiodothyronine (Y),Trimethyl (K),Trimethyl (Protein N-term A),Trimethyl (R),Trimethyl:13C(3)2H(9) (K),Trimethyl:13C(3)2H(9) (R),Trimethyl:2H(9) (K),Trimethyl:2H(9) (R),Trioxidation (C),Trioxidation (F),Trioxidation (W),Trioxidation (Y),Tripalmitate (Protein N-term C),Tris (N),Triton (C-term),Triton (N-term),Trp->Ala (W),Trp->Arg (W),Trp->Asn (W),Trp->Asp (W),Trp->Cys (W),Trp->Gln (W),Trp->Glu (W),Trp->Gly (W),Trp->His (W),Trp->Hydroxykynurenin (W),Trp->Kynurenin (W),Trp->Lys (W),Trp->Met (W),Trp->Oxolactone (W),Trp->Phe (W),Trp->Pro (W),Trp->Ser (W),Trp->Thr (W),Trp->Tyr (W),Trp->Val (W),Trp->Xle (W),Tween20 (N-term),Tween80 (C-term),Tyr->Ala (Y),Tyr->Arg (Y),Tyr->Asn (Y),Tyr->Asp (Y),Tyr->Cys (Y),Tyr->Dha (Y),Tyr->Gln (Y),Tyr->Glu (Y),Tyr->Gly (Y),Tyr->His (Y),Tyr->Lys (Y),Tyr->Met (Y),Tyr->Phe (Y),Tyr->Pro (Y),Tyr->Ser (Y),Tyr->Thr (Y),Tyr->Trp (Y),Tyr->Val (Y),Tyr->Xle (Y),Ub-Br2 (C),Ub-fluorescein (C),Ub-VME (C),UgiJoullie (D),UgiJoullie (E),UgiJoullieProGly (D),UgiJoullieProGly (E),UgiJoullieProGlyProGly (D),UgiJoullieProGlyProGly (E),Unknown:162 (C-term),Unknown:162 (D),Unknown:162 (E),Unknown:162 (N-term),Unknown:177 (C-term),Unknown:177 (D),Unknown:177 (E),Unknown:177 (N-term),Unknown:210 (C-term),Unknown:210 (D),Unknown:210 (E),Unknown:210 (N-term),Unknown:216 (C-term),Unknown:216 (D),Unknown:216 (E),Unknown:216 (N-term),Unknown:234 (C-term),Unknown:234 (D),Unknown:234 (E),Unknown:234 (N-term),Unknown:248 (C-term),Unknown:248 (D),Unknown:248 (E),Unknown:248 (N-term),Unknown:250 (C-term),Unknown:250 (D),Unknown:250 (E),Unknown:250 (N-term),Unknown:302 (C-term),Unknown:302 (D),Unknown:302 (E),Unknown:302 (N-term),Unknown:306 (C-term),Unknown:306 (D),Unknown:306 (E),Unknown:306 (N-term),Unknown:420 (C-term),Unknown:420 (N-term),Val->Ala (V),Val->Arg (V),Val->Asn (V),Val->Asp (V),Val->Cys (V),Val->Gln (V),Val->Glu (V),Val->Gly (V),Val->His (V),Val->Lys (V),Val->Met (V),Val->Phe (V),Val->Pro (V),Val->Ser (V),Val->Thr (V),Val->Trp (V),Val->Tyr (V),Val->Xle (V),VFQQQTGG (K),VIEVYQEQTGG (K),Withaferin (C),Xle->Ala (I),Xle->Ala (L),Xle->Arg (I),Xle->Arg (L),Xle->Asn (I),Xle->Asn (L),Xle->Asp (I),Xle->Asp (L),Xle->Cys (I),Xle->Cys (L),Xle->Gln (I),Xle->Gln (L),Xle->Glu (I),Xle->Glu (L),Xle->Gly (I),Xle->Gly (L),Xle->His (I),Xle->His (L),Xle->Lys (I),Xle->Lys (L),Xle->Met (I),Xle->Met (L),Xle->Phe (I),Xle->Phe (L),Xle->Pro (I),Xle->Pro (L),Xle->Ser (I),Xle->Ser (L),Xle->Thr (I),Xle->Thr (L),Xle->Trp (I),Xle->Trp (L),Xle->Tyr (I),Xle->Tyr (L),Xle->Val (I),Xle->Val (L),Xlink:B10621 (C),Xlink:BMOE (C),Xlink:BS2G[113] (K),Xlink:BS2G[113] (Protein N-term),Xlink:BS2G[114] (K),Xlink:BS2G[114] (Protein N-term),Xlink:BS2G[217] (K),Xlink:BS2G[217] (Protein N-term),Xlink:BS2G[96] (K),Xlink:BS2G[96] (Protein N-term),Xlink:BuUrBu[111] (K),Xlink:BuUrBu[111] (Protein N-term),Xlink:BuUrBu[196] (K),Xlink:BuUrBu[196] (Protein N-term),Xlink:BuUrBu[213] (K),Xlink:BuUrBu[213] (Protein N-term),Xlink:BuUrBu[214] (K),Xlink:BuUrBu[214] (Protein N-term),Xlink:BuUrBu[317] (K),Xlink:BuUrBu[317] (Protein N-term),Xlink:BuUrBu[85] (K),Xlink:BuUrBu[85] (Protein N-term),Xlink:DFDNB (K),Xlink:DFDNB (N),Xlink:DFDNB (Q),Xlink:DFDNB (R),Xlink:DMP[122] (K),Xlink:DMP[122] (Protein N-term),Xlink:DMP[139] (K),Xlink:DMP[139] (Protein N-term),Xlink:DMP[140] (K),Xlink:DMP[140] (Protein N-term),Xlink:DMP[154] (K),Xlink:DMP[154] (Protein N-term),Xlink:DSS[138] (K),Xlink:DSS[138] (Protein N-term),Xlink:DSS[155] (K),Xlink:DSS[155] (Protein N-term),Xlink:DSS[156] (K),Xlink:DSS[156] (Protein N-term),Xlink:DSS[259] (K),Xlink:DSS[259] (Protein N-term),Xlink:DSSO[104] (K),Xlink:DSSO[104] (Protein N-term),Xlink:DSSO[158] (K),Xlink:DSSO[158] (Protein N-term),Xlink:DSSO[175] (K),Xlink:DSSO[175] (Protein N-term),Xlink:DSSO[176] (K),Xlink:DSSO[176] (Protein N-term),Xlink:DSSO[279] (K),Xlink:DSSO[279] (Protein N-term),Xlink:DSSO[54] (K),Xlink:DSSO[54] (Protein N-term),Xlink:DSSO[86] (K),Xlink:DSSO[86] (Protein N-term),Xlink:DST[114] (K),Xlink:DST[114] (Protein N-term),Xlink:DST[132] (K),Xlink:DST[132] (Protein N-term),Xlink:DST[56] (K),Xlink:DST[56] (Protein N-term),Xlink:DTBP[172] (K),Xlink:DTBP[172] (Protein N-term),Xlink:DTBP[87] (K),Xlink:DTBP[87] (Protein N-term),Xlink:DTSSP[174] (K),Xlink:DTSSP[174] (Protein N-term),Xlink:DTSSP[192] (K),Xlink:DTSSP[192] (Protein N-term),Xlink:DTSSP[88] (K),Xlink:DTSSP[88] (Protein N-term),Xlink:EGS[115] (K),Xlink:EGS[115] (Protein N-term),Xlink:EGS[226] (K),Xlink:EGS[226] (Protein N-term),Xlink:EGS[244] (K),Xlink:EGS[244] (Protein N-term),Xlink:SMCC[219] (C),Xlink:SMCC[219] (K),Xlink:SMCC[219] (Protein N-term),Xlink:SMCC[237] (C),Xlink:SMCC[237] (K),Xlink:SMCC[237] (Protein N-term),Xlink:SMCC[321] (C),ZGB (K),ZGB (N-term),ZQG (K)
variable_modifications[Oxidation (M)] Variable modifications, specified using Unimod (www.unimod.org) terms, e.g. 'Carbamidomethyl (C)' or 'Oxidation (M)'15N-oxobutanoic (N-term C),15N-oxobutanoic (Protein N-term S),15N-oxobutanoic (Protein N-term T),2-dimethylsuccinyl (C),2-monomethylsuccinyl (C),2-nitrobenzyl (Y),2-succinyl (C),2HPG (R),3-deoxyglucosone (R),3-hydroxybenzyl-phosphate (K),3-hydroxybenzyl-phosphate (S),3-hydroxybenzyl-phosphate (T),3-hydroxybenzyl-phosphate (Y),3-phosphoglyceryl (K),3sulfo (N-term),4-ONE (C),4-ONE (H),4-ONE (K),4-ONE+Delta:H(-2)O(-1) (C),4-ONE+Delta:H(-2)O(-1) (H),4-ONE+Delta:H(-2)O(-1) (K),4AcAllylGal (C),a-type-ion (C-term),AccQTag (K),AccQTag (N-term),Acetyl (C),Acetyl (H),Acetyl (K),Acetyl (N-term),Acetyl (Protein N-term),Acetyl (R),Acetyl (S),Acetyl (T),Acetyl (Y),Acetyl:13C(2) (K),Acetyl:13C(2) (Protein N-term),Acetyl:2H(3) (H),Acetyl:2H(3) (K),Acetyl:2H(3) (N-term),Acetyl:2H(3) (Protein N-term),Acetyl:2H(3) (S),Acetyl:2H(3) (T),Acetyl:2H(3) (Y),Acetyldeoxyhypusine (K),Acetylhypusine (K),ADP-Ribosyl (C),ADP-Ribosyl (D),ADP-Ribosyl (E),ADP-Ribosyl (K),ADP-Ribosyl (N),ADP-Ribosyl (R),ADP-Ribosyl (S),ADP-Ribosyl (T),AEBS (H),AEBS (K),AEBS (Protein N-term),AEBS (S),AEBS (Y),AEC-MAEC (S),AEC-MAEC (T),AEC-MAEC:2H(4) (S),AEC-MAEC:2H(4) (T),AFB1_Dialdehyde (K),AHA-Alkyne (M),AHA-Alkyne-KDDDD (M),AHA-SS (M),AHA-SS_CAM (M),Ahx2+Hsl (C-term),Ala->Arg (A),Ala->Asn (A),Ala->Asp (A),Ala->Cys (A),Ala->Gln (A),Ala->Glu (A),Ala->Gly (A),Ala->His (A),Ala->Lys (A),Ala->Met (A),Ala->Phe (A),Ala->Pro (A),Ala->Ser (A),Ala->Thr (A),Ala->Trp (A),Ala->Tyr (A),Ala->Val (A),Ala->Xle (A),Amidated (C-term),Amidated (Protein C-term),Amidine (K),Amidine (N-term),Amidino (C),Amino (Y),Ammonia-loss (N),Ammonia-loss (N-term C),Ammonia-loss (Protein N-term S),Ammonia-loss (Protein N-term T),Ammonium (C-term),Ammonium (D),Ammonium (E),AMTzHexNAc2 (N),AMTzHexNAc2 (S),AMTzHexNAc2 (T),Andro-H2O (C),Archaeol (C),Arg (N-term),Arg->Ala (R),Arg->Asn (R),Arg->Asp (R),Arg->Cys (R),Arg->Gln (R),Arg->Glu (R),Arg->GluSA (R),Arg->Gly (R),Arg->His (R),Arg->Lys (R),Arg->Met (R),Arg->Npo (R),Arg->Orn (R),Arg->Phe (R),Arg->Pro (R),Arg->Ser (R),Arg->Thr (R),Arg->Trp (R),Arg->Tyr (R),Arg->Val (R),Arg->Xle (R),Arg-loss (C-term R),Arg2PG (R),Argbiotinhydrazide (R),AROD (C),Asn->Ala (N),Asn->Arg (N),Asn->Asp (N),Asn->Cys (N),Asn->Gln (N),Asn->Glu (N),Asn->Gly (N),Asn->His (N),Asn->Lys (N),Asn->Met (N),Asn->Phe (N),Asn->Pro (N),Asn->Ser (N),Asn->Thr (N),Asn->Trp (N),Asn->Tyr (N),Asn->Val (N),Asn->Xle (N),Asp->Ala (D),Asp->Arg (D),Asp->Asn (D),Asp->Cys (D),Asp->Gln (D),Asp->Glu (D),Asp->Gly (D),Asp->His (D),Asp->Lys (D),Asp->Met (D),Asp->Phe (D),Asp->Pro (D),Asp->Ser (D),Asp->Thr (D),Asp->Trp (D),Asp->Tyr (D),Asp->Val (D),Asp->Xle (D),Aspartylurea (H),Atto495Maleimide (C),AzidoF (F),azole (C),azole (S),Bacillosamine (N),BADGE (C),BDMAPP (H),BDMAPP (K),BDMAPP (Protein N-term),BDMAPP (W),BDMAPP (Y),BEMAD_C (C),BEMAD_C:2H(6) (C),BEMAD_ST (S),BEMAD_ST (T),BEMAD_ST:2H(6) (S),BEMAD_ST:2H(6) (T),Benzoyl (K),Benzoyl (N-term),benzylguanidine (K),betaFNA (C),betaFNA (K),BHT (C),BHT (H),BHT (K),BHTOH (C),BHTOH (H),BHTOH (K),Biotin (K),Biotin (N-term),Biotin-HPDP (C),Biotin-PEG-PRA (M),Biotin-PEO-Amine (D),Biotin-PEO-Amine (E),Biotin-PEO-Amine (Protein C-term),Biotin-phenacyl (C),Biotin-phenacyl (H),Biotin-phenacyl (S),Biotin-tyramide (Y),Biotin:Aha-DADPS (M),Biotin:Cayman-10013 (C),Biotin:Cayman-10141 (C),Biotin:Invitrogen-M1602 (C),Biotin:Sigma-B1267 (C),Biotin:Thermo-21325 (K),Biotin:Thermo-21328 (K),Biotin:Thermo-21328 (N-term),Biotin:Thermo-21330 (K),Biotin:Thermo-21330 (N-term),Biotin:Thermo-21345 (Q),Biotin:Thermo-21360 (X),Biotin:Thermo-21901+2H2O (C),Biotin:Thermo-21901+H2O (C),Biotin:Thermo-21911 (C),Biotin:Thermo-33033 (X),Biotin:Thermo-33033-H (X),Biotin:Thermo-88310 (K),Biotin:Thermo-88317 (S),Biotin:Thermo-88317 (Y),biotinAcrolein298 (C),biotinAcrolein298 (H),biotinAcrolein298 (K),biotinAcrolein298 (Protein N-term),BisANS (K),bisANS-sulfonates (K),bisANS-sulfonates (S),bisANS-sulfonates (T),BITC (C),BITC (K),BITC (N-term),BMP-piperidinol (C),BMP-piperidinol (M),Brij35 (N-term),Brij58 (N-term),Bromo (F),Bromo (H),Bromo (W),Bromo (Y),Bromobimane (C),Butyryl (K),C8-QAT (K),C8-QAT (N-term),CAF (N-term),CAMthiopropanoyl (K),CAMthiopropanoyl (Protein N-term),Can-FP-biotin (S),Can-FP-biotin (T),Can-FP-biotin (Y),Carbamidomethyl (C),Carbamidomethyl (D),Carbamidomethyl (E),Carbamidomethyl (H),Carbamidomethyl (K),Carbamidomethyl (M),Carbamidomethyl (N-term),Carbamidomethyl (S),Carbamidomethyl (T),Carbamidomethyl (U),Carbamidomethyl (Y),CarbamidomethylDTT (C),Carbamyl (C),Carbamyl (K),Carbamyl (M),Carbamyl (N-term),Carbamyl (Protein N-term),Carbamyl (R),Carbamyl (S),Carbamyl (T),Carbamyl (Y),Carbofuran (S),Carbonyl (A),Carbonyl (E),Carbonyl (I),Carbonyl (L),Carbonyl (Q),Carbonyl (R),Carbonyl (S),Carbonyl (V),Carboxy (D),Carboxy (E),Carboxy (K),Carboxy (Protein N-term M),Carboxy (W),Carboxy->Thiocarboxy (Protein C-term G),Carboxyethyl (H),Carboxyethyl (K),Carboxyethylpyrrole (K),Carboxymethyl (C),Carboxymethyl (K),Carboxymethyl (N-term),Carboxymethyl (U),Carboxymethyl (W),Carboxymethyl:13C(2) (C),CarboxymethylDMAP (N-term),CarboxymethylDTT (C),Cation:Ag (C-term),Cation:Ag (D),Cation:Ag (E),Cation:Al[III] (C-term),Cation:Al[III] (D),Cation:Al[III] (E),Cation:Ca[II] (C-term),Cation:Ca[II] (D),Cation:Ca[II] (E),Cation:Cu[I] (C-term),Cation:Cu[I] (D),Cation:Cu[I] (E),Cation:Cu[I] (H),Cation:Fe[II] (C-term),Cation:Fe[II] (D),Cation:Fe[II] (E),Cation:Fe[III] (C-term),Cation:Fe[III] (D),Cation:Fe[III] (E),Cation:K (C-term),Cation:K (D),Cation:K (E),Cation:Li (C-term),Cation:Li (D),Cation:Li (E),Cation:Mg[II] (C-term),Cation:Mg[II] (D),Cation:Mg[II] (E),Cation:Na (C-term),Cation:Na (D),Cation:Na (E),Cation:Ni[II] (C-term),Cation:Ni[II] (D),Cation:Ni[II] (E),Cation:Zn[II] (C-term),Cation:Zn[II] (D),Cation:Zn[II] (E),Cation:Zn[II] (H),cGMP (C),cGMP (S),cGMP+RMP-loss (C),cGMP+RMP-loss (S),CHDH (D),Chlorination (W),Chlorination (Y),Cholesterol (Protein C-term),CIGG (K),CLIP_TRAQ_2 (K),CLIP_TRAQ_2 (N-term),CLIP_TRAQ_2 (Y),CLIP_TRAQ_3 (K),CLIP_TRAQ_3 (N-term),CLIP_TRAQ_3 (Y),CLIP_TRAQ_4 (K),CLIP_TRAQ_4 (N-term),CLIP_TRAQ_4 (Y),CoenzymeA (C),Cresylphosphate (H),Cresylphosphate (K),Cresylphosphate (R),Cresylphosphate (S),Cresylphosphate (T),Cresylphosphate (Y),CresylSaligeninPhosphate (H),CresylSaligeninPhosphate (K),CresylSaligeninPhosphate (R),CresylSaligeninPhosphate (S),CresylSaligeninPhosphate (T),CresylSaligeninPhosphate (Y),Crotonaldehyde (C),Crotonaldehyde (H),Crotonaldehyde (K),Crotonyl (K),CuSMo (C),CUSTOM0 (A),CUSTOM0 (C),CUSTOM0 (C-term),CUSTOM0 (D),CUSTOM0 (E),CUSTOM0 (F),CUSTOM0 (G),CUSTOM0 (H),CUSTOM0 (I),CUSTOM0 (K),CUSTOM0 (L),CUSTOM0 (M),CUSTOM0 (N),CUSTOM0 (N-term),CUSTOM0 (P),CUSTOM0 (Q),CUSTOM0 (R),CUSTOM0 (S),CUSTOM0 (T),CUSTOM0 (V),CUSTOM0 (W),CUSTOM0 (Y),CUSTOM1 (A),CUSTOM1 (C),CUSTOM1 (C-term),CUSTOM1 (D),CUSTOM1 (E),CUSTOM1 (F),CUSTOM1 (G),CUSTOM1 (H),CUSTOM1 (I),CUSTOM1 (K),CUSTOM1 (L),CUSTOM1 (M),CUSTOM1 (N),CUSTOM1 (N-term),CUSTOM1 (P),CUSTOM1 (Q),CUSTOM1 (R),CUSTOM1 (S),CUSTOM1 (T),CUSTOM1 (V),CUSTOM1 (W),CUSTOM1 (Y),CUSTOM2 (A),CUSTOM2 (C),CUSTOM2 (C-term),CUSTOM2 (D),CUSTOM2 (E),CUSTOM2 (F),CUSTOM2 (G),CUSTOM2 (H),CUSTOM2 (I),CUSTOM2 (K),CUSTOM2 (L),CUSTOM2 (M),CUSTOM2 (N),CUSTOM2 (N-term),CUSTOM2 (P),CUSTOM2 (Q),CUSTOM2 (R),CUSTOM2 (S),CUSTOM2 (T),CUSTOM2 (V),CUSTOM2 (W),CUSTOM2 (Y),CUSTOM3 (A),CUSTOM3 (C),CUSTOM3 (C-term),CUSTOM3 (D),CUSTOM3 (E),CUSTOM3 (F),CUSTOM3 (G),CUSTOM3 (H),CUSTOM3 (I),CUSTOM3 (K),CUSTOM3 (L),CUSTOM3 (M),CUSTOM3 (N),CUSTOM3 (N-term),CUSTOM3 (P),CUSTOM3 (Q),CUSTOM3 (R),CUSTOM3 (S),CUSTOM3 (T),CUSTOM3 (V),CUSTOM3 (W),CUSTOM3 (Y),CUSTOM4 (A),CUSTOM4 (C),CUSTOM4 (C-term),CUSTOM4 (D),CUSTOM4 (E),CUSTOM4 (F),CUSTOM4 (G),CUSTOM4 (H),CUSTOM4 (I),CUSTOM4 (K),CUSTOM4 (L),CUSTOM4 (M),CUSTOM4 (N),CUSTOM4 (N-term),CUSTOM4 (P),CUSTOM4 (Q),CUSTOM4 (R),CUSTOM4 (S),CUSTOM4 (T),CUSTOM4 (V),CUSTOM4 (W),CUSTOM4 (Y),CUSTOM5 (A),CUSTOM5 (C),CUSTOM5 (C-term),CUSTOM5 (D),CUSTOM5 (E),CUSTOM5 (F),CUSTOM5 (G),CUSTOM5 (H),CUSTOM5 (I),CUSTOM5 (K),CUSTOM5 (L),CUSTOM5 (M),CUSTOM5 (N),CUSTOM5 (N-term),CUSTOM5 (P),CUSTOM5 (Q),CUSTOM5 (R),CUSTOM5 (S),CUSTOM5 (T),CUSTOM5 (V),CUSTOM5 (W),CUSTOM5 (Y),CUSTOM6 (A),CUSTOM6 (C),CUSTOM6 (C-term),CUSTOM6 (D),CUSTOM6 (E),CUSTOM6 (F),CUSTOM6 (G),CUSTOM6 (H),CUSTOM6 (I),CUSTOM6 (K),CUSTOM6 (L),CUSTOM6 (M),CUSTOM6 (N),CUSTOM6 (N-term),CUSTOM6 (P),CUSTOM6 (Q),CUSTOM6 (R),CUSTOM6 (S),CUSTOM6 (T),CUSTOM6 (V),CUSTOM6 (W),CUSTOM6 (Y),CUSTOM7 (A),CUSTOM7 (C),CUSTOM7 (C-term),CUSTOM7 (D),CUSTOM7 (E),CUSTOM7 (F),CUSTOM7 (G),CUSTOM7 (H),CUSTOM7 (I),CUSTOM7 (K),CUSTOM7 (L),CUSTOM7 (M),CUSTOM7 (N),CUSTOM7 (N-term),CUSTOM7 (P),CUSTOM7 (Q),CUSTOM7 (R),CUSTOM7 (S),CUSTOM7 (T),CUSTOM7 (V),CUSTOM7 (W),CUSTOM7 (Y),CUSTOM8 (A),CUSTOM8 (C),CUSTOM8 (C-term),CUSTOM8 (D),CUSTOM8 (E),CUSTOM8 (F),CUSTOM8 (G),CUSTOM8 (H),CUSTOM8 (I),CUSTOM8 (K),CUSTOM8 (L),CUSTOM8 (M),CUSTOM8 (N),CUSTOM8 (N-term),CUSTOM8 (P),CUSTOM8 (Q),CUSTOM8 (R),CUSTOM8 (S),CUSTOM8 (T),CUSTOM8 (V),CUSTOM8 (W),CUSTOM8 (Y),CUSTOM9 (A),CUSTOM9 (C),CUSTOM9 (C-term),CUSTOM9 (D),CUSTOM9 (E),CUSTOM9 (F),CUSTOM9 (G),CUSTOM9 (H),CUSTOM9 (I),CUSTOM9 (K),CUSTOM9 (L),CUSTOM9 (M),CUSTOM9 (N),CUSTOM9 (N-term),CUSTOM9 (P),CUSTOM9 (Q),CUSTOM9 (R),CUSTOM9 (S),CUSTOM9 (T),CUSTOM9 (V),CUSTOM9 (W),CUSTOM9 (Y),Cy3-maleimide (C),Cy3b-maleimide (C),Cyano (C),CyDye-Cy3 (C),CyDye-Cy5 (C),Cys->Ala (C),Cys->Arg (C),Cys->Asn (C),Cys->Asp (C),Cys->CamSec (C),Cys->Dha (C),Cys->ethylaminoAla (C),Cys->Gln (C),Cys->Glu (C),Cys->Gly (C),Cys->His (C),Cys->Lys (C),Cys->Met (C),Cys->methylaminoAla (C),Cys->Oxoalanine (C),Cys->Phe (C),Cys->Pro (C),Cys->PyruvicAcid (Protein N-term C),Cys->SecNEM (C),Cys->SecNEM:2H(5) (C),Cys->Ser (C),Cys->Thr (C),Cys->Trp (C),Cys->Tyr (C),Cys->Val (C),Cys->Xle (C),Cysteinyl (C),cysTMT (C),cysTMT6plex (C),Cytopiloyne (C),Cytopiloyne (K),Cytopiloyne (N-term),Cytopiloyne (P),Cytopiloyne (R),Cytopiloyne (S),Cytopiloyne (Y),Cytopiloyne+water (C),Cytopiloyne+water (K),Cytopiloyne+water (N-term),Cytopiloyne+water (R),Cytopiloyne+water (S),Cytopiloyne+water (T),Cytopiloyne+water (Y),DAET (S),DAET (T),Dansyl (K),Dansyl (N-term),Dap-DSP (A),Dap-DSP (E),Dap-DSP (K),Deamidated (N),Deamidated (Protein N-term F),Deamidated (Q),Deamidated (R),Deamidated:18O(1) (N),Deamidated:18O(1) (Q),Decanoyl (S),Decanoyl (T),Decarboxylation (D),Decarboxylation (E),DEDGFLYMVYASQETFG (K),Dehydrated (D),Dehydrated (N-term C),Dehydrated (Protein C-term N),Dehydrated (Protein C-term Q),Dehydrated (S),Dehydrated (T),Dehydrated (Y),Dehydro (C),Delta:H(-1)N(-1)18O(1) (N),Delta:H(-4)O(2) (W),Delta:H(-4)O(3) (W),Delta:H(10)C(8)O(1) (K),Delta:H(2)C(2) (H),Delta:H(2)C(2) (K),Delta:H(2)C(2) (N-term),Delta:H(2)C(2) (Protein N-term),Delta:H(2)C(3) (K),Delta:H(2)C(3)O(1) (K),Delta:H(2)C(3)O(1) (R),Delta:H(2)C(5) (K),Delta:H(4)C(2) (H),Delta:H(4)C(2) (K),Delta:H(4)C(2) (N-term),Delta:H(4)C(2)O(-1)S(1) (S),Delta:H(4)C(3) (H),Delta:H(4)C(3) (K),Delta:H(4)C(3) (Protein N-term),Delta:H(4)C(3)O(1) (C),Delta:H(4)C(3)O(1) (H),Delta:H(4)C(3)O(1) (K),Delta:H(4)C(3)O(1) (R),Delta:H(4)C(3)O(2) (K),Delta:H(4)C(5)O(1) (R),Delta:H(4)C(6) (K),Delta:H(5)C(2) (P),Delta:H(6)C(3)O(1) (C),Delta:H(6)C(3)O(1) (H),Delta:H(6)C(3)O(1) (K),Delta:H(6)C(3)O(1) (Protein N-term),Delta:H(6)C(6)O(1) (K),Delta:H(6)C(7)O(4) (R),Delta:H(8)C(6)O(1) (K),Delta:H(8)C(6)O(1) (Protein N-term),Delta:H(8)C(6)O(2) (K),Delta:Hg(1) (C),Delta:O(4) (W),Delta:S(-1)Se(1) (C),Delta:S(-1)Se(1) (M),Delta:Se(1) (C),Deoxy (D),Deoxy (S),Deoxy (T),Deoxyhypusine (K),Deoxyhypusine (Q),DeStreak (C),Dethiomethyl (M),dHex (N),dHex (S),dHex (T),dHex(1)Hex(1) (S),dHex(1)Hex(1) (T),dHex(1)Hex(1)HexA(1)HexNAc(3) (S),dHex(1)Hex(1)HexA(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(1)Kdn(1) (S),dHex(1)Hex(1)HexNAc(1)Kdn(1) (T),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(1)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(2)Kdn(1) (S),dHex(1)Hex(1)HexNAc(2)Kdn(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(1)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3) (S),dHex(1)Hex(1)HexNAc(3) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (S),dHex(1)Hex(1)HexNAc(3)NeuGc(1) (T),dHex(1)Hex(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(1)HexNAc(4) (S),dHex(1)Hex(1)HexNAc(4) (T),dHex(1)Hex(2) (S),dHex(1)Hex(2) (T),dHex(1)Hex(2)HexA(1) (S),dHex(1)Hex(2)HexA(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexA(1)HexNAc(2) (S),dHex(1)Hex(2)HexA(1)HexNAc(2) (T),dHex(1)Hex(2)HexNAc(1) (S),dHex(1)Hex(2)HexNAc(1) (T),dHex(1)Hex(2)HexNAc(1)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(1)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (N),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(2) (T),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (S),dHex(1)Hex(2)HexNAc(2)NeuGc(3) (T),dHex(1)Hex(2)HexNAc(2)Pent(1) (N),dHex(1)Hex(2)HexNAc(2)Sulf(1) (S),dHex(1)Hex(2)HexNAc(2)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3) (N),dHex(1)Hex(2)HexNAc(3) (S),dHex(1)Hex(2)HexNAc(3) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),dHex(1)Hex(2)HexNAc(3)Sulf(1) (S),dHex(1)Hex(2)HexNAc(3)Sulf(1) (T),dHex(1)Hex(2)HexNAc(4) (N),dHex(1)Hex(2)HexNAc(4) (S),dHex(1)Hex(2)HexNAc(4) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (S),dHex(1)Hex(2)HexNAc(4)NeuAc(2) (T),dHex(1)Hex(2)HexNAc(4)Sulf(2) (S),dHex(1)Hex(2)HexNAc(4)Sulf(2) (T),dHex(1)Hex(3) (S),dHex(1)Hex(3) (T),dHex(1)Hex(3)HexA(1)HexNAc(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(2) (S),dHex(1)Hex(3)HexA(1)HexNAc(2) (T),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexA(2)HexNAc(2) (S),dHex(1)Hex(3)HexA(2)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(1) (S),dHex(1)Hex(3)HexNAc(1) (T),dHex(1)Hex(3)HexNAc(1)Sulf(1) (S),dHex(1)Hex(3)HexNAc(1)Sulf(1) (T),dHex(1)Hex(3)HexNAc(2) (N),dHex(1)Hex(3)HexNAc(2) (S),dHex(1)Hex(3)HexNAc(2) (T),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(1)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(1)Hex(3)HexNAc(2)Pent(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (N),dHex(1)Hex(3)HexNAc(2)Sulf(1) (S),dHex(1)Hex(3)HexNAc(2)Sulf(1) (T),dHex(1)Hex(3)HexNAc(3) (N),dHex(1)Hex(3)HexNAc(3) (S),dHex(1)Hex(3)HexNAc(3) (T),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(1)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(1)Hex(3)HexNAc(3)Pent(1) (N),dHex(1)Hex(3)HexNAc(3)Pent(2) (N),dHex(1)Hex(3)HexNAc(3)Pent(3) (N),dHex(1)Hex(3)HexNAc(3)Sulf(1) (S),dHex(1)Hex(3)HexNAc(3)Sulf(1) (T),dHex(1)Hex(3)HexNAc(4) (N),dHex(1)Hex(3)HexNAc(4) (S),dHex(1)Hex(3)HexNAc(4) (T),dHex(1)Hex(3)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(1) (N),dHex(1)Hex(3)HexNAc(4)Pent(2) (N),dHex(1)Hex(3)HexNAc(4)Pent(3) (N),dHex(1)Hex(3)HexNAc(4)Sulf(1) (N),dHex(1)Hex(3)HexNAc(5) (N),dHex(1)Hex(3)HexNAc(5) (S),dHex(1)Hex(3)HexNAc(5) (T),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (N),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (S),dHex(1)Hex(3)HexNAc(5)NeuAc(1) (T),dHex(1)Hex(3)HexNAc(5)Sulf(1) (N),dHex(1)Hex(3)HexNAc(6) (N),dHex(1)Hex(3)HexNAc(6) (S),dHex(1)Hex(3)HexNAc(6) (T),dHex(1)Hex(3)HexNAc(6)Sulf(1) (N),dHex(1)Hex(4) (S),dHex(1)Hex(4) (T),dHex(1)Hex(4)HexA(1) (S),dHex(1)Hex(4)HexA(1) (T),dHex(1)Hex(4)HexA(1)HexNAc(2) (S),dHex(1)Hex(4)HexA(1)HexNAc(2) (T),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(1)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(1)Hex(4)HexNAc(1)Pent(1) (N),dHex(1)Hex(4)HexNAc(2) (N),dHex(1)Hex(4)HexNAc(2) (S),dHex(1)Hex(4)HexNAc(2) (T),dHex(1)Hex(4)HexNAc(2)Pent(1) (N),dHex(1)Hex(4)HexNAc(3) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (S),dHex(1)Hex(4)HexNAc(3)NeuAc(1) (T),dHex(1)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(4)HexNAc(3)Pent(1) (N),dHex(1)Hex(4)HexNAc(3)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4) (N),dHex(1)Hex(4)HexNAc(4) (S),dHex(1)Hex(4)HexNAc(4) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (S),dHex(1)Hex(4)HexNAc(4)NeuAc(1) (T),dHex(1)Hex(4)HexNAc(4)NeuAc(1)Sulf(1) (N),dHex(1)Hex(4)HexNAc(4)Pent(1) (N),dHex(1)Hex(4)HexNAc(4)Sulf(1) (N),dHex(1)Hex(4)HexNAc(5) (N),dHex(1)Hex(4)HexNAc(5)Sulf(1) (N),dHex(1)Hex(5) (S),dHex(1)Hex(5) (T),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexA(1)HexNAc(3)Sulf(2) (N),dHex(1)Hex(5)HexNAc(2) (N),dHex(1)Hex(5)HexNAc(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(3) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1) (N),dHex(1)Hex(5)HexNAc(3)NeuGc(1)Sulf(1) (N),dHex(1)Hex(5)HexNAc(3)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4) (N),dHex(1)Hex(5)HexNAc(4)Me(2)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(1) (N),dHex(1)Hex(5)HexNAc(4)NeuAc(2) (N),dHex(1)Hex(5)HexNAc(4)Pent(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(1) (N),dHex(1)Hex(5)HexNAc(4)Sulf(2) (N),dHex(1)Hex(5)HexNAc(5) (N),dHex(1)Hex(6) (S),dHex(1)Hex(6) (T),dHex(1)Hex(6)HexNAc(2) (N),dHex(1)Hex(6)HexNAc(3) (N),dHex(1)Hex(6)HexNAc(3)Sulf(1) (N),dHex(1)Hex(6)HexNAc(4) (N),dHex(1)Hex(7)HexNAc(2) (N),dHex(1)Hex(7)HexNAc(3) (N),dHex(1)Hex(7)HexNAc(3)Phos(1) (N),dHex(1)Hex(7)HexNAc(3)Sulf(1) (N),dHex(1)Hex(7)HexNAc(4) (N),dHex(1)Hex(8)HexNAc(2) (N),dHex(1)HexNAc(3) (S),dHex(1)HexNAc(3) (T),dHex(1)HexNAc(4) (S),dHex(1)HexNAc(4) (T),dHex(1)HexNAc(5) (S),dHex(1)HexNAc(5) (T),dHex(2)Hex(1)HexNAc(1)Kdn(1) (S),dHex(2)Hex(1)HexNAc(1)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)Kdn(1) (S),dHex(2)Hex(1)HexNAc(2)Kdn(1) (T),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(1)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(1)HexNAc(3) (S),dHex(2)Hex(1)HexNAc(3) (T),dHex(2)Hex(1)HexNAc(4)Sulf(1) (S),dHex(2)Hex(1)HexNAc(4)Sulf(1) (T),dHex(2)Hex(2) (S),dHex(2)Hex(2) (T),dHex(2)Hex(2)HexA(1) (S),dHex(2)Hex(2)HexA(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(1) (T),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(1) (S),dHex(2)Hex(2)HexNAc(1) (T),dHex(2)Hex(2)HexNAc(2) (N),dHex(2)Hex(2)HexNAc(2) (S),dHex(2)Hex(2)HexNAc(2) (T),dHex(2)Hex(2)HexNAc(2)Kdn(1) (S),dHex(2)Hex(2)HexNAc(2)Kdn(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(1) (S),dHex(2)Hex(2)HexNAc(2)Sulf(1) (T),dHex(2)Hex(2)HexNAc(2)Sulf(2) (S),dHex(2)Hex(2)HexNAc(2)Sulf(2) (T),dHex(2)Hex(2)HexNAc(3) (N),dHex(2)Hex(2)HexNAc(3) (S),dHex(2)Hex(2)HexNAc(3) (T),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (S),dHex(2)Hex(2)HexNAc(3)NeuGc(1) (T),dHex(2)Hex(2)HexNAc(3)Sulf(1) (S),dHex(2)Hex(2)HexNAc(3)Sulf(1) (T),dHex(2)Hex(2)HexNAc(4) (S),dHex(2)Hex(2)HexNAc(4) (T),dHex(2)Hex(2)HexNAc(4)Sulf(2) (S),dHex(2)Hex(2)HexNAc(4)Sulf(2) (T),dHex(2)Hex(2)HexNAc(5) (S),dHex(2)Hex(2)HexNAc(5) (T),dHex(2)Hex(2)HexNAc(6)Sulf(1) (S),dHex(2)Hex(2)HexNAc(6)Sulf(1) (T),dHex(2)Hex(3) (S),dHex(2)Hex(3) (T),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(1)Sulf(1) (S),dHex(2)Hex(3)HexNAc(1)Sulf(1) (T),dHex(2)Hex(3)HexNAc(2) (N),dHex(2)Hex(3)HexNAc(2) (S),dHex(2)Hex(3)HexNAc(2) (T),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (S),dHex(2)Hex(3)HexNAc(2)NeuGc(1) (T),dHex(2)Hex(3)HexNAc(2)Sulf(1) (S),dHex(2)Hex(3)HexNAc(2)Sulf(1) (T),dHex(2)Hex(3)HexNAc(3) (N),dHex(2)Hex(3)HexNAc(3) (S),dHex(2)Hex(3)HexNAc(3) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (S),dHex(2)Hex(3)HexNAc(3)NeuAc(2) (T),dHex(2)Hex(3)HexNAc(3)Pent(1) (N),dHex(2)Hex(3)HexNAc(3)Pent(2) (N),dHex(2)Hex(3)HexNAc(3)Sulf(1) (S),dHex(2)Hex(3)HexNAc(3)Sulf(1) (T),dHex(2)Hex(3)HexNAc(4) (N),dHex(2)Hex(3)HexNAc(4) (S),dHex(2)Hex(3)HexNAc(4) (T),dHex(2)Hex(3)HexNAc(4)NeuAc(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(1) (N),dHex(2)Hex(3)HexNAc(4)Pent(2) (N),dHex(2)Hex(3)HexNAc(5) (N),dHex(2)Hex(3)HexNAc(5) (S),dHex(2)Hex(3)HexNAc(5) (T),dHex(2)Hex(3)HexNAc(6) (N),dHex(2)Hex(4) (S),dHex(2)Hex(4) (T),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (S),dHex(2)Hex(4)HexA(1)HexNAc(3)Sulf(1) (T),dHex(2)Hex(4)HexNAc(1) (S),dHex(2)Hex(4)HexNAc(1) (T),dHex(2)Hex(4)HexNAc(2) (N),dHex(2)Hex(4)HexNAc(2) (S),dHex(2)Hex(4)HexNAc(2) (T),dHex(2)Hex(4)HexNAc(3) (N),dHex(2)Hex(4)HexNAc(3)NeuAc(1)Sulf(1) (N),dHex(2)Hex(4)HexNAc(3)Pent(1) (N),dHex(2)Hex(4)HexNAc(4) (N),dHex(2)Hex(4)HexNAc(4) (S),dHex(2)Hex(4)HexNAc(4) (T),dHex(2)Hex(4)HexNAc(4)Pent(1) (N),dHex(2)Hex(4)HexNAc(4)Sulf(1) (N),dHex(2)Hex(4)HexNAc(5) (N),dHex(2)Hex(4)HexNAc(5) (S),dHex(2)Hex(4)HexNAc(5) (T),dHex(2)Hex(5)HexNAc(2)Me(1) (S),dHex(2)Hex(5)HexNAc(2)Me(1) (T),dHex(2)Hex(5)HexNAc(3)Pent(1) (N),dHex(2)Hex(5)HexNAc(4) (N),dHex(2)HexNAc(2)Kdn(1) (S),dHex(2)HexNAc(2)Kdn(1) (T),dHex(2)HexNAc(5) (S),dHex(2)HexNAc(5) (T),dHex(2)HexNAc(7) (S),dHex(2)HexNAc(7) (T),dHex(3)Hex(1)HexNAc(2)Kdn(1) (S),dHex(3)Hex(1)HexNAc(2)Kdn(1) (T),dHex(3)Hex(1)HexNAc(3)Kdn(1) (S),dHex(3)Hex(1)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (S),dHex(3)Hex(2)HexA(1)HexNAc(2)Sulf(1) (T),dHex(3)Hex(2)HexNAc(2) (S),dHex(3)Hex(2)HexNAc(2) (T),dHex(3)Hex(2)HexNAc(2)Kdn(1) (S),dHex(3)Hex(2)HexNAc(2)Kdn(1) (T),dHex(3)Hex(2)HexNAc(3) (S),dHex(3)Hex(2)HexNAc(3) (T),dHex(3)Hex(2)HexNAc(3)Kdn(1) (S),dHex(3)Hex(2)HexNAc(3)Kdn(1) (T),dHex(3)Hex(2)HexNAc(4) (S),dHex(3)Hex(2)HexNAc(4) (T),dHex(3)Hex(2)HexNAc(4)Sulf(2) (S),dHex(3)Hex(2)HexNAc(4)Sulf(2) (T),dHex(3)Hex(3)HexNAc(1) (S),dHex(3)Hex(3)HexNAc(1) (T),dHex(3)Hex(3)HexNAc(2) (S),dHex(3)Hex(3)HexNAc(2) (T),dHex(3)Hex(3)HexNAc(3) (S),dHex(3)Hex(3)HexNAc(3) (T),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (S),dHex(3)Hex(3)HexNAc(3)NeuAc(1) (T),dHex(3)Hex(3)HexNAc(3)Pent(1) (N),dHex(3)Hex(3)HexNAc(4) (N),dHex(3)Hex(3)HexNAc(4)Pent(1) (N),dHex(3)Hex(4)HexNAc(4) (N),dHex(3)Hex(4)HexNAc(4) (S),dHex(3)Hex(4)HexNAc(4) (T),dHex(3)Hex(4)HexNAc(4)Sulf(1) (N),dHex(3)HexNAc(3)Kdn(1) (S),dHex(3)HexNAc(3)Kdn(1) (T),dHex(4)Hex(1)HexNAc(1)Kdn(2) (S),dHex(4)Hex(1)HexNAc(1)Kdn(2) (T),dHex(4)Hex(1)HexNAc(2)Kdn(1) (S),dHex(4)Hex(1)HexNAc(2)Kdn(1) (T),dHex(4)Hex(1)HexNAc(3)Kdn(1) (S),dHex(4)Hex(1)HexNAc(3)Kdn(1) (T),dHex(4)Hex(2)HexNAc(2)Kdn(1) (S),dHex(4)Hex(2)HexNAc(2)Kdn(1) (T),dHex(4)Hex(2)HexNAc(3) (S),dHex(4)Hex(2)HexNAc(3) (T),dHex(4)Hex(3)HexNAc(2)NeuAc(1) (S),dHex(4)Hex(3)HexNAc(2)NeuAc(1) (T),dHex(4)Hex(3)HexNAc(3) (S),dHex(4)Hex(3)HexNAc(3) (T),dHex(4)HexNAc(3)Kdn(1) (S),dHex(4)HexNAc(3)Kdn(1) (T),DHP (C),Diacylglycerol (C),DiART6plex (K),DiART6plex (N-term),DiART6plex (Protein N-term),DiART6plex (Y),DiART6plex115 (K),DiART6plex115 (N-term),DiART6plex115 (Protein N-term),DiART6plex115 (Y),DiART6plex116/119 (K),DiART6plex116/119 (N-term),DiART6plex116/119 (Protein N-term),DiART6plex116/119 (Y),DiART6plex117 (K),DiART6plex117 (N-term),DiART6plex117 (Protein N-term),DiART6plex117 (Y),DiART6plex118 (K),DiART6plex118 (N-term),DiART6plex118 (Protein N-term),DiART6plex118 (Y),Dibromo (Y),Dicarbamidomethyl (C),Dicarbamidomethyl (H),Dicarbamidomethyl (K),Dicarbamidomethyl (N-term),Dicarbamidomethyl (R),dichlorination (C),dichlorination (Y),Didehydro (C-term K),Didehydro (S),Didehydro (T),Didehydro (Y),Didehydroretinylidene (K),Diethyl (K),Diethyl (N-term),Diethylphosphate (C),Diethylphosphate (H),Diethylphosphate (K),Diethylphosphate (N-term),Diethylphosphate (S),Diethylphosphate (T),Diethylphosphate (Y),Diethylphosphothione (C),Diethylphosphothione (H),Diethylphosphothione (K),Diethylphosphothione (S),Diethylphosphothione (T),Diethylphosphothione (Y),Difuran (Y),Dihydroxyimidazolidine (R),Diiodo (H),Diiodo (Y),Diironsubcluster (C),Diisopropylphosphate (K),Diisopropylphosphate (N-term),Diisopropylphosphate (S),Diisopropylphosphate (T),Diisopropylphosphate (Y),DiLeu4plex (K),DiLeu4plex (N-term),DiLeu4plex (Y),DiLeu4plex115 (K),DiLeu4plex115 (N-term),DiLeu4plex115 (Y),DiLeu4plex117 (K),DiLeu4plex117 (N-term),DiLeu4plex117 (Y),DiLeu4plex118 (K),DiLeu4plex118 (N-term),DiLeu4plex118 (Y),Dimethyl (K),Dimethyl (N),Dimethyl (N-term),Dimethyl (Protein N-term P),Dimethyl (Protein N-term),Dimethyl (R),Dimethyl:2H(2)13C (K),Dimethyl:2H(2)13C (N),Dimethyl:2H(2)13C (N-term),Dimethyl:2H(2)13C (Protein N-term P),Dimethyl:2H(2)13C (R),Dimethyl:2H(4) (K),Dimethyl:2H(4) (N-term),Dimethyl:2H(4) (Protein N-term),Dimethyl:2H(4) (R),Dimethyl:2H(4)13C(2) (K),Dimethyl:2H(4)13C(2) (N-term),Dimethyl:2H(4)13C(2) (Protein N-term),Dimethyl:2H(4)13C(2) (R),Dimethyl:2H(6) (K),Dimethyl:2H(6) (N-term),Dimethyl:2H(6) (R),Dimethyl:2H(6)13C(2) (K),Dimethyl:2H(6)13C(2) (N-term),Dimethyl:2H(6)13C(2) (Protein N-term),Dimethyl:2H(6)13C(2) (R),DimethylamineGMBS (C),Dimethylaminoethyl (C),DimethylArsino (C),Dimethylphosphothione (C),Dimethylphosphothione (H),Dimethylphosphothione (K),Dimethylphosphothione (S),Dimethylphosphothione (T),Dimethylphosphothione (Y),DimethylpyrroleAdduct (K),Dioxidation (C),Dioxidation (E),Dioxidation (F),Dioxidation (I),Dioxidation (K),Dioxidation (L),Dioxidation (M),Dioxidation (P),Dioxidation (R),Dioxidation (U),Dioxidation (V),Dioxidation (W),Dioxidation (Y),Diphthamide (H),Dipyridyl (C),Dipyrrolylmethanemethyl (C),DMPO (C),DMPO (H),DMPO (Y),DNCB_hapten (C),DNCB_hapten (H),DNCB_hapten (K),DNCB_hapten (Y),dNIC (K),dNIC (N-term),DNPS (C),DNPS (W),DTT (C),DyLight-maleimide (C),DYn-2 (C),EDEDTIDVFQQQTGG (K),EDT-iodoacetyl-PEO-biotin (S),EDT-iodoacetyl-PEO-biotin (T),EDT-maleimide-PEO-biotin (S),EDT-maleimide-PEO-biotin (T),EEEDVIEVYQEQTGG (K),EGCG1 (C),EGCG2 (C),EHD-diphenylpentanone (C),EHD-diphenylpentanone (M),EQAT (C),EQAT:2H(5) (C),EQIGG (K),ESP (K),ESP (N-term),ESP:2H(10) (K),ESP:2H(10) (N-term),Ethanedithiol (S),Ethanedithiol (T),Ethanolamine (C),Ethanolamine (C-term),Ethanolamine (D),Ethanolamine (E),Ethanolyl (C),Ethanolyl (K),Ethanolyl (R),Ethyl (C-term),Ethyl (D),Ethyl (E),Ethyl (K),Ethyl (N-term),Ethyl (Protein N-term),Ethyl+Deamidated (N),Ethyl+Deamidated (Q),ethylamino (S),ethylamino (T),Ethylphosphate (K),Ethylphosphate (N-term),Ethylphosphate (S),Ethylphosphate (T),Ethylphosphate (Y),ethylsulfonylethyl (C),ethylsulfonylethyl (H),ethylsulfonylethyl (K),ExacTagAmine (K),ExacTagThiol (C),FAD (C),FAD (H),FAD (Y),Farnesyl (C),Fluorescein (C),Fluorescein-tyramine (Y),Fluoro (A),Fluoro (F),Fluoro (W),Fluoro (Y),FMN (S),FMN (T),FMNC (C),FMNH (C),FMNH (H),FNEM (C),Formyl (K),Formyl (N-term),Formyl (Protein N-term),Formyl (S),Formyl (T),Formylasparagine (H),FormylMet (Protein N-term),FP-Biotin (K),FP-Biotin (S),FP-Biotin (T),FP-Biotin (Y),FTC (C),FTC (K),FTC (P),FTC (R),FTC (S),Furan (Y),G-H1 (R),Galactosyl (K),Galactosyl (N-term),GEE (Q),GeranylGeranyl (C),GG (C),GG (K),GG (Protein N-term),GG (S),GG (T),GGQ (K),GIST-Quat (K),GIST-Quat (N-term),GIST-Quat:2H(3) (K),GIST-Quat:2H(3) (N-term),GIST-Quat:2H(6) (K),GIST-Quat:2H(6) (N-term),GIST-Quat:2H(9) (K),GIST-Quat:2H(9) (N-term),Gln->Ala (Q),Gln->Arg (Q),Gln->Asn (Q),Gln->Asp (Q),Gln->Cys (Q),Gln->Glu (Q),Gln->Gly (Q),Gln->His (Q),Gln->Lys (Q),Gln->Met (Q),Gln->Phe (Q),Gln->Pro (Q),Gln->pyro-Glu (N-term Q),Gln->Ser (Q),Gln->Thr (Q),Gln->Trp (Q),Gln->Tyr (Q),Gln->Val (Q),Gln->Xle (Q),Glu (E),Glu (Protein C-term),Glu+O(2) (H),Glu->Ala (E),Glu->Arg (E),Glu->Asn (E),Glu->Asp (E),Glu->Cys (E),Glu->Gln (E),Glu->Gly (E),Glu->His (E),Glu->Lys (E),Glu->Met (E),Glu->Phe (E),Glu->Pro (E),Glu->pyro-Glu (N-term E),Glu->pyro-Glu+Methyl (N-term E),Glu->pyro-Glu+Methyl:2H(2)13C(1) (N-term E),Glu->Ser (E),Glu->Thr (E),Glu->Trp (E),Glu->Tyr (E),Glu->Val (E),Glu->Xle (E),glucosone (R),Glucosylgalactosyl (K),Glucuronyl (Protein N-term),Glucuronyl (S),Glucuronyl (T),GluGlu (E),GluGlu (Protein C-term),GluGluGlu (E),GluGluGlu (Protein C-term),GluGluGluGlu (E),GluGluGluGlu (Protein C-term),Gluratylation (K),Glutathione (C),Gly (K),Gly (S),Gly (T),Gly+O(2) (H),Gly->Ala (G),Gly->Arg (G),Gly->Asn (G),Gly->Asp (G),Gly->Cys (G),Gly->Gln (G),Gly->Glu (G),Gly->His (G),Gly->Lys (G),Gly->Met (G),Gly->Phe (G),Gly->Pro (G),Gly->Ser (G),Gly->Thr (G),Gly->Trp (G),Gly->Tyr (G),Gly->Val (G),Gly->Xle (G),Gly-loss+Amide (C-term G),Glycerophospho (S),GlycerylPE (E),glycidamide (K),glycidamide (N-term),Glycosyl (P),glyoxalAGE (R),GNLLFLACYCIGG (K),GPIanchor (Protein C-term),Guanidinyl (K),Guanidinyl (N-term),Haloxon (C),Haloxon (H),Haloxon (K),Haloxon (S),Haloxon (T),Haloxon (Y),HCysteinyl (C),HCysThiolactone (K),Heme (C),Heme (H),Hep (K),Hep (N),Hep (Q),Hep (R),Hep (S),Hep (T),Hex (C),Hex (K),Hex (N),Hex (N-term),Hex (R),Hex (S),Hex (T),Hex (W),Hex (Y),Hex(1)HexA(1) (S),Hex(1)HexA(1) (T),Hex(1)HexA(1)HexNAc(1) (S),Hex(1)HexA(1)HexNAc(1) (T),Hex(1)HexA(1)HexNAc(2) (S),Hex(1)HexA(1)HexNAc(2) (T),Hex(1)HexNAc(1) (N),Hex(1)HexNAc(1) (S),Hex(1)HexNAc(1) (T),Hex(1)HexNAc(1)dHex(1) (N),Hex(1)HexNAc(1)dHex(1) (S),Hex(1)HexNAc(1)dHex(1) (T),Hex(1)HexNAc(1)dHex(1)Me(1) (S),Hex(1)HexNAc(1)dHex(1)Me(1) (T),Hex(1)HexNAc(1)dHex(1)Me(2) (S),Hex(1)HexNAc(1)dHex(1)Me(2) (T),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (S),Hex(1)HexNAc(1)Kdn(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(1) (N),Hex(1)HexNAc(1)NeuAc(1) (S),Hex(1)HexNAc(1)NeuAc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(1)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(1)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(1)NeuAc(2) (N),Hex(1)HexNAc(1)NeuAc(2) (S),Hex(1)HexNAc(1)NeuAc(2) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(1) (T),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (S),Hex(1)HexNAc(1)NeuAc(2)Ac(2) (T),Hex(1)HexNAc(1)NeuAc(3) (S),Hex(1)HexNAc(1)NeuAc(3) (T),Hex(1)HexNAc(1)NeuGc(1) (S),Hex(1)HexNAc(1)NeuGc(1) (T),Hex(1)HexNAc(1)NeuGc(2) (S),Hex(1)HexNAc(1)NeuGc(2) (T),Hex(1)HexNAc(1)NeuGc(3) (S),Hex(1)HexNAc(1)NeuGc(3) (T),Hex(1)HexNAc(1)NeuGc(4) (S),Hex(1)HexNAc(1)NeuGc(4) (T),Hex(1)HexNAc(1)NeuGc(5) (S),Hex(1)HexNAc(1)NeuGc(5) (T),Hex(1)HexNAc(1)Phos(1) (S),Hex(1)HexNAc(1)Phos(1) (T),Hex(1)HexNAc(1)Sulf(1) (S),Hex(1)HexNAc(1)Sulf(1) (T),Hex(1)HexNAc(2) (N),Hex(1)HexNAc(2) (S),Hex(1)HexNAc(2) (T),Hex(1)HexNAc(2)dHex(1) (N),Hex(1)HexNAc(2)dHex(1) (S),Hex(1)HexNAc(2)dHex(1) (T),Hex(1)HexNAc(2)dHex(1)Pent(1) (N),Hex(1)HexNAc(2)dHex(2) (N),Hex(1)HexNAc(2)dHex(2) (S),Hex(1)HexNAc(2)dHex(2) (T),Hex(1)HexNAc(2)dHex(2)Sulf(1) (S),Hex(1)HexNAc(2)dHex(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(1) (S),Hex(1)HexNAc(2)NeuAc(1) (T),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(1)HexNAc(2)NeuAc(2) (S),Hex(1)HexNAc(2)NeuAc(2) (T),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(1)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(1)HexNAc(2)NeuGc(1) (S),Hex(1)HexNAc(2)NeuGc(1) (T),Hex(1)HexNAc(2)Pent(1) (N),Hex(1)HexNAc(2)Sulf(1) (S),Hex(1)HexNAc(2)Sulf(1) (T),Hex(1)HexNAc(3) (S),Hex(1)HexNAc(3) (T),Hex(1)HexNAc(3)NeuAc(1) (S),Hex(1)HexNAc(3)NeuAc(1) (T),Hex(1)HexNAc(3)NeuAc(2) (S),Hex(1)HexNAc(3)NeuAc(2) (T),Hex(1)HexNAc(3)NeuGc(1) (S),Hex(1)HexNAc(3)NeuGc(1) (T),Hex(1)HexNAc(3)Sulf(1) (S),Hex(1)HexNAc(3)Sulf(1) (T),Hex(1)HexNAc(4)dHex(1)Sulf(1) (S),Hex(1)HexNAc(4)dHex(1)Sulf(1) (T),Hex(1)NeuAc(1) (S),Hex(1)NeuAc(1) (T),Hex(1)NeuAc(1)Pent(1) (S),Hex(1)NeuAc(1)Pent(1) (T),Hex(1)NeuGc(1) (S),Hex(1)NeuGc(1) (T),Hex(1)Pent(1) (S),Hex(1)Pent(1) (T),Hex(1)Pent(2) (S),Hex(1)Pent(2) (T),Hex(1)Pent(2)Me(1) (S),Hex(1)Pent(2)Me(1) (T),Hex(1)Pent(3) (S),Hex(1)Pent(3) (T),Hex(1)Pent(3)Me(1) (S),Hex(1)Pent(3)Me(1) (T),Hex(10)HexNAc(1) (N),Hex(10)Phos(3) (S),Hex(10)Phos(3) (T),Hex(2) (K),Hex(2) (R),Hex(2) (S),Hex(2) (T),Hex(2)HexA(1)HexNAc(1)Sulf(1) (S),Hex(2)HexA(1)HexNAc(1)Sulf(1) (T),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)NeuAc(1)Pent(1)Sulf(1) (T),Hex(2)HexA(1)Pent(1)Sulf(1) (S),Hex(2)HexA(1)Pent(1)Sulf(1) (T),Hex(2)HexNAc(1) (N),Hex(2)HexNAc(1) (S),Hex(2)HexNAc(1) (T),Hex(2)HexNAc(1)Me(1) (S),Hex(2)HexNAc(1)Me(1) (T),Hex(2)HexNAc(1)NeuGc(1) (S),Hex(2)HexNAc(1)NeuGc(1) (T),Hex(2)HexNAc(1)NeuGc(2) (S),Hex(2)HexNAc(1)NeuGc(2) (T),Hex(2)HexNAc(1)NeuGc(3) (S),Hex(2)HexNAc(1)NeuGc(3) (T),Hex(2)HexNAc(1)NeuGc(4) (S),Hex(2)HexNAc(1)NeuGc(4) (T),Hex(2)HexNAc(1)Pent(1)HexA(1) (S),Hex(2)HexNAc(1)Pent(1)HexA(1) (T),Hex(2)HexNAc(1)Sulf(1) (S),Hex(2)HexNAc(1)Sulf(1) (T),Hex(2)HexNAc(2) (N),Hex(2)HexNAc(2) (S),Hex(2)HexNAc(2) (T),Hex(2)HexNAc(2)dHex(1) (N),Hex(2)HexNAc(2)dHex(1) (S),Hex(2)HexNAc(2)dHex(1) (T),Hex(2)HexNAc(2)NeuAc(1) (N),Hex(2)HexNAc(2)NeuAc(1) (S),Hex(2)HexNAc(2)NeuAc(1) (T),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(2)NeuAc(2) (S),Hex(2)HexNAc(2)NeuAc(2) (T),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (S),Hex(2)HexNAc(2)NeuAc(2)Sulf(1) (T),Hex(2)HexNAc(2)NeuGc(1) (S),Hex(2)HexNAc(2)NeuGc(1) (T),Hex(2)HexNAc(2)Pent(1) (N),Hex(2)HexNAc(2)Sulf(1) (S),Hex(2)HexNAc(2)Sulf(1) (T),Hex(2)HexNAc(3) (N),Hex(2)HexNAc(3) (S),Hex(2)HexNAc(3) (T),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (S),Hex(2)HexNAc(3)NeuAc(1)NeuGc(1) (T),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(2)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(2)HexNAc(3)NeuAc(2) (S),Hex(2)HexNAc(3)NeuAc(2) (T),Hex(2)HexNAc(3)NeuAc(3) (S),Hex(2)HexNAc(3)NeuAc(3) (T),Hex(2)HexNAc(3)NeuGc(1) (S),Hex(2)HexNAc(3)NeuGc(1) (T),Hex(2)HexNAc(3)NeuGc(2) (S),Hex(2)HexNAc(3)NeuGc(2) (T),Hex(2)HexNAc(3)NeuGc(3) (S),Hex(2)HexNAc(3)NeuGc(3) (T),Hex(2)HexNAc(3)Sulf(1) (S),Hex(2)HexNAc(3)Sulf(1) (T),Hex(2)HexNAc(4) (N),Hex(2)HexNAc(4) (S),Hex(2)HexNAc(4) (T),Hex(2)HexNAc(4)NeuAc(1) (S),Hex(2)HexNAc(4)NeuAc(1) (T),Hex(2)HexNAc(5) (S),Hex(2)HexNAc(5) (T),Hex(2)NeuAc(1) (S),Hex(2)NeuAc(1) (T),Hex(2)Pent(2) (S),Hex(2)Pent(2) (T),Hex(2)Pent(2)Me(1) (S),Hex(2)Pent(2)Me(1) (T),Hex(2)Sulf(1) (S),Hex(2)Sulf(1) (T),Hex(3) (N),Hex(3) (S),Hex(3) (T),Hex(3)HexNAc(1) (N),Hex(3)HexNAc(1) (S),Hex(3)HexNAc(1) (T),Hex(3)HexNAc(1)HexA(1) (S),Hex(3)HexNAc(1)HexA(1) (T),Hex(3)HexNAc(1)Me(1) (S),Hex(3)HexNAc(1)Me(1) (T),Hex(3)HexNAc(1)Pent(1) (N),Hex(3)HexNAc(2) (N),Hex(3)HexNAc(2) (S),Hex(3)HexNAc(2) (T),Hex(3)HexNAc(2)NeuAc(1) (N),Hex(3)HexNAc(2)NeuAc(2) (S),Hex(3)HexNAc(2)NeuAc(2) (T),Hex(3)HexNAc(2)Pent(1) (N),Hex(3)HexNAc(2)Phos(1) (N),Hex(3)HexNAc(3) (N),Hex(3)HexNAc(3) (S),Hex(3)HexNAc(3) (T),Hex(3)HexNAc(3)NeuAc(1) (S),Hex(3)HexNAc(3)NeuAc(1) (T),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(1)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(2) (S),Hex(3)HexNAc(3)NeuAc(2) (T),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (S),Hex(3)HexNAc(3)NeuAc(2)Sulf(1) (T),Hex(3)HexNAc(3)NeuAc(3) (S),Hex(3)HexNAc(3)NeuAc(3) (T),Hex(3)HexNAc(3)NeuGc(1) (S),Hex(3)HexNAc(3)NeuGc(1) (T),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (S),Hex(3)HexNAc(3)NeuGc(1)Sulf(1) (T),Hex(3)HexNAc(3)Pent(1) (N),Hex(3)HexNAc(3)Sulf(1) (N),Hex(3)HexNAc(3)Sulf(1) (S),Hex(3)HexNAc(3)Sulf(1) (T),Hex(3)HexNAc(4) (N),Hex(3)HexNAc(4) (S),Hex(3)HexNAc(4) (T),Hex(3)HexNAc(4)NeuAc(1) (N),Hex(3)HexNAc(4)NeuAc(2) (N),Hex(3)HexNAc(4)Pent(1) (N),Hex(3)HexNAc(4)Sulf(1) (N),Hex(3)HexNAc(5) (N),Hex(3)HexNAc(5) (S),Hex(3)HexNAc(5) (T),Hex(3)HexNAc(5)NeuAc(1) (N),Hex(3)HexNAc(5)Sulf(1) (N),Hex(3)HexNAc(6) (N),Hex(3)HexNAc(6) (S),Hex(3)HexNAc(6) (T),Hex(3)HexNAc(6)NeuAc(1) (N),Hex(3)HexNAc(6)Sulf(1) (N),Hex(3)HexNAc(6)Sulf(2) (N),Hex(3)HexNAc(7) (N),Hex(3)HexNAc(7)Sulf(1) (N),Hex(4) (S),Hex(4) (T),Hex(4)HexA(1) (S),Hex(4)HexA(1) (T),Hex(4)HexA(1)HexNAc(1) (S),Hex(4)HexA(1)HexNAc(1) (T),Hex(4)HexNAc(1) (N),Hex(4)HexNAc(1) (S),Hex(4)HexNAc(1) (T),Hex(4)HexNAc(2) (N),Hex(4)HexNAc(2)NeuAc(1) (N),Hex(4)HexNAc(2)NeuAc(1) (S),Hex(4)HexNAc(2)NeuAc(1) (T),Hex(4)HexNAc(2)Pent(1) (N),Hex(4)HexNAc(3) (N),Hex(4)HexNAc(3) (S),Hex(4)HexNAc(3) (T),Hex(4)HexNAc(3)NeuAc(1) (N),Hex(4)HexNAc(3)NeuAc(1) (S),Hex(4)HexNAc(3)NeuAc(1) (T),Hex(4)HexNAc(3)NeuAc(2) (N),Hex(4)HexNAc(3)NeuGc(1) (N),Hex(4)HexNAc(3)Pent(1) (N),Hex(4)HexNAc(4) (N),Hex(4)HexNAc(4) (S),Hex(4)HexNAc(4) (T),Hex(4)HexNAc(4)Me(2)Pent(1) (N),Hex(4)HexNAc(4)NeuAc(1) (N),Hex(4)HexNAc(4)NeuAc(1) (S),Hex(4)HexNAc(4)NeuAc(1) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(2) (T),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (S),Hex(4)HexNAc(4)NeuAc(1)Sulf(3) (T),Hex(4)HexNAc(4)NeuGc(1) (N),Hex(4)HexNAc(4)NeuGc(1) (S),Hex(4)HexNAc(4)NeuGc(1) (T),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (S),Hex(4)HexNAc(4)NeuGc(1)Sulf(2) (T),Hex(4)HexNAc(4)Pent(1) (N),Hex(4)HexNAc(4)Sulf(1) (N),Hex(4)HexNAc(4)Sulf(2) (S),Hex(4)HexNAc(4)Sulf(2) (T),Hex(4)HexNAc(5) (N),Hex(4)HexNAc(5)NeuAc(1) (N),Hex(4)HexNAc(5)Sulf(1) (N),Hex(4)HexNAc(6) (N),Hex(4)Phos(1) (S),Hex(4)Phos(1) (T),Hex(5) (S),Hex(5) (T),Hex(5)HexA(1) (S),Hex(5)HexA(1) (T),Hex(5)HexNAc(1) (N),Hex(5)HexNAc(1) (S),Hex(5)HexNAc(1) (T),Hex(5)HexNAc(2) (N),Hex(5)HexNAc(2)Phos(1) (N),Hex(5)HexNAc(3) (N),Hex(5)HexNAc(3)Pent(1) (N),Hex(5)HexNAc(4) (N),Hex(5)HexNAc(4) (S),Hex(5)HexNAc(4) (T),Hex(5)HexNAc(4)Me(2)Pent(1) (N),Hex(5)HexNAc(4)NeuAc(1) (N),Hex(5)HexNAc(4)NeuAc(1)Ac(1) (N),Hex(5)HexNAc(4)NeuAc(1)Ac(2) (N),Hex(5)HexNAc(4)NeuAc(1)Sulf(1) (N),Hex(5)HexNAc(4)NeuAc(2) (N),Hex(5)HexNAc(4)NeuGc(1) (N),Hex(5)HexNAc(4)Sulf(1) (N),Hex(5)HexNAc(5) (N),Hex(5)HexNAc(5) (S),Hex(5)HexNAc(5) (T),Hex(5)Phos(1) (S),Hex(5)Phos(1) (T),Hex(5)Phos(3) (S),Hex(5)Phos(3) (T),Hex(6)HexNAc(1) (N),Hex(6)HexNAc(2) (N),Hex(6)HexNAc(2)Phos(1) (N),Hex(6)HexNAc(3) (N),Hex(6)HexNAc(3)Phos(1) (N),Hex(6)HexNAc(4) (N),Hex(6)HexNAc(4) (S),Hex(6)HexNAc(4) (T),Hex(6)HexNAc(4)Me(3) (N),Hex(6)HexNAc(4)Me(3)Pent(1) (N),Hex(6)HexNAc(5) (N),Hex(6)HexNAc(5)NeuAc(3) (N),Hex(6)Phos(1) (S),Hex(6)Phos(1) (T),Hex(6)Phos(3) (S),Hex(6)Phos(3) (T),Hex(7)HexNAc(1) (N),Hex(7)HexNAc(2) (N),Hex(7)HexNAc(2)Phos(1) (N),Hex(7)HexNAc(2)Phos(2) (N),Hex(7)HexNAc(3) (N),Hex(7)HexNAc(3)Phos(1) (N),Hex(7)HexNAc(4) (N),Hex(7)HexNAc(6) (N),Hex(7)HexNAc(6) (S),Hex(7)HexNAc(6) (T),Hex(7)Phos(3) (S),Hex(7)Phos(3) (T),Hex(8)HexNAc(1) (N),Hex(8)HexNAc(2) (N),Hex(8)Phos(3) (S),Hex(8)Phos(3) (T),Hex(9) (N),Hex(9)HexNAc(1) (N),Hex(9)HexNAc(2) (N),Hex(9)Phos(3) (S),Hex(9)Phos(3) (T),HexA(2)HexNAc(3) (S),HexA(2)HexNAc(3) (T),HexN (K),HexN (N),HexN (S),HexN (T),HexN (W),HexNAc (C),HexNAc (N),HexNAc (S),HexNAc (T),HexNAc(1)dHex(1) (N),HexNAc(1)dHex(1) (S),HexNAc(1)dHex(1) (T),HexNAc(1)dHex(2) (N),HexNAc(1)Kdn(2) (S),HexNAc(1)Kdn(2) (T),HexNAc(1)NeuAc(1) (S),HexNAc(1)NeuAc(1) (T),HexNAc(1)NeuGc(1) (S),HexNAc(1)NeuGc(1) (T),HexNAc(1)NeuGc(2) (S),HexNAc(1)NeuGc(2) (T),HexNAc(2) (N),HexNAc(2) (S),HexNAc(2) (T),HexNAc(2)dHex(1) (N),HexNAc(2)dHex(2) (N),HexNAc(2)NeuAc(1) (S),HexNAc(2)NeuAc(1) (T),HexNAc(2)NeuAc(1)Sulf(1) (S),HexNAc(2)NeuAc(1)Sulf(1) (T),HexNAc(2)NeuGc(1) (S),HexNAc(2)NeuGc(1) (T),HexNAc(2)Sulf(1) (S),HexNAc(2)Sulf(1) (T),HexNAc(3) (S),HexNAc(3) (T),HexNAc(3)Sulf(1) (S),HexNAc(3)Sulf(1) (T),HexNAc(4) (S),HexNAc(4) (T),HexNAc(5) (S),HexNAc(5) (T),His+O(2) (H),His->Ala (H),His->Arg (H),His->Asn (H),His->Asp (H),His->Cys (H),His->Gln (H),His->Glu (H),His->Gly (H),His->Lys (H),His->Met (H),His->Phe (H),His->Pro (H),His->Ser (H),His->Thr (H),His->Trp (H),His->Tyr (H),His->Val (H),His->Xle (H),HMVK (C),HN2_mustard (C),HN2_mustard (H),HN2_mustard (K),HN3_mustard (C),HN3_mustard (H),HN3_mustard (K),HNE (A),HNE (C),HNE (H),HNE (K),HNE (L),HNE+Delta:H(2) (C),HNE+Delta:H(2) (H),HNE+Delta:H(2) (K),HNE-BAHAH (C),HNE-BAHAH (H),HNE-BAHAH (K),HNE-Delta:H(2)O (C),HNE-Delta:H(2)O (H),HNE-Delta:H(2)O (K),Homocysteic_acid (M),HPG (R),Hydroxamic_acid (D),Hydroxamic_acid (E),Hydroxycinnamyl (C),Hydroxyfarnesyl (C),Hydroxyheme (E),hydroxyisobutyryl (K),Hydroxymethyl (N),HydroxymethylOP (K),Hydroxytrimethyl (K),Hypusine (K),IASD (C),IBTP (C),ICAT-C (C),ICAT-C:13C(9) (C),ICAT-D (C),ICAT-D:2H(8) (C),ICAT-G (C),ICAT-G:2H(8) (C),ICAT-H (C),ICAT-H:13C(6) (C),ICDID (C),ICDID:2H(6) (C),ICPL (K),ICPL (N-term),ICPL (Protein N-term),ICPL:13C(6) (K),ICPL:13C(6) (N-term),ICPL:13C(6) (Protein N-term),ICPL:13C(6)2H(4) (K),ICPL:13C(6)2H(4) (N-term),ICPL:13C(6)2H(4) (Protein N-term),ICPL:2H(4) (K),ICPL:2H(4) (N-term),ICPL:2H(4) (Protein N-term),IDEnT (C),IED-Biotin (C),IGBP (C),IGBP:13C(2) (C),IMEHex(2)NeuAc(1) (K),IMID (K),IMID:2H(4) (K),Iminobiotin (K),Iminobiotin (N-term),Iodo (H),Iodo (Y),Iodoacetanilide (C),Iodoacetanilide (K),Iodoacetanilide (N-term),Iodoacetanilide:13C(6) (C),Iodoacetanilide:13C(6) (K),Iodoacetanilide:13C(6) (N-term),iodoTMT (C),iodoTMT (D),iodoTMT (E),iodoTMT (H),iodoTMT (K),iodoTMT6plex (C),iodoTMT6plex (D),iodoTMT6plex (E),iodoTMT6plex (H),iodoTMT6plex (K),IodoU-AMP (F),IodoU-AMP (W),IodoU-AMP (Y),ISD_z+2_ion (N-term),Isopropylphospho (S),Isopropylphospho (T),Isopropylphospho (Y),iTRAQ4plex (C),iTRAQ4plex (H),iTRAQ4plex (K),iTRAQ4plex (N-term),iTRAQ4plex (Protein N-term),iTRAQ4plex (S),iTRAQ4plex (T),iTRAQ4plex (Y),iTRAQ4plex114 (C),iTRAQ4plex114 (K),iTRAQ4plex114 (N-term),iTRAQ4plex114 (Y),iTRAQ4plex115 (C),iTRAQ4plex115 (K),iTRAQ4plex115 (N-term),iTRAQ4plex115 (Y),iTRAQ8plex (C),iTRAQ8plex (H),iTRAQ8plex (K),iTRAQ8plex (N-term),iTRAQ8plex (Protein N-term),iTRAQ8plex (S),iTRAQ8plex (T),iTRAQ8plex (Y),iTRAQ8plex:13C(6)15N(2) (C),iTRAQ8plex:13C(6)15N(2) (K),iTRAQ8plex:13C(6)15N(2) (N-term),iTRAQ8plex:13C(6)15N(2) (Y),Kdo (S),Kdo (T),Label:13C(1)2H(3) (M),Label:13C(1)2H(3)+Oxidation (M),Label:13C(2)15N(2) (K),Label:13C(3) (A),Label:13C(3)15N(1) (A),Label:13C(3)15N(1) (S),Label:13C(4) (M),Label:13C(4)+Oxidation (M),Label:13C(4)15N(1) (D),Label:13C(4)15N(2)+GG (K),Label:13C(5) (P),Label:13C(5)15N(1) (E),Label:13C(5)15N(1) (M),Label:13C(5)15N(1) (P),Label:13C(5)15N(1) (V),Label:13C(6) (I),Label:13C(6) (K),Label:13C(6) (L),Label:13C(6) (R),Label:13C(6)+Acetyl (K),Label:13C(6)+Dimethyl (K),Label:13C(6)+GG (K),Label:13C(6)15N(1) (I),Label:13C(6)15N(1) (L),Label:13C(6)15N(2) (K),Label:13C(6)15N(2)+Acetyl (K),Label:13C(6)15N(2)+Dimethyl (K),Label:13C(6)15N(2)+GG (K),Label:13C(6)15N(4) (R),Label:13C(6)15N(4)+Dimethyl (R),Label:13C(6)15N(4)+Dimethyl:2H(6)13C(2) (R),Label:13C(6)15N(4)+Methyl (R),Label:13C(6)15N(4)+Methyl:2H(3)13C(1) (R),Label:13C(9) (F),Label:13C(9) (Y),Label:13C(9)+Phospho (Y),Label:13C(9)15N(1) (F),Label:15N(1) (A),Label:15N(1) (C),Label:15N(1) (D),Label:15N(1) (E),Label:15N(1) (F),Label:15N(1) (G),Label:15N(1) (I),Label:15N(1) (L),Label:15N(1) (M),Label:15N(1) (P),Label:15N(1) (S),Label:15N(1) (T),Label:15N(1) (V),Label:15N(1) (Y),Label:15N(2) (K),Label:15N(2) (N),Label:15N(2) (Q),Label:15N(2) (W),Label:15N(2)2H(9) (K),Label:15N(3) (H),Label:15N(4) (R),Label:18O(1) (C-term),Label:18O(1) (S),Label:18O(1) (T),Label:18O(1) (Y),Label:18O(2) (C-term),Label:2H(10) (L),Label:2H(3) (L),Label:2H(3) (M),Label:2H(3)+Oxidation (M),Label:2H(4) (A),Label:2H(4) (F),Label:2H(4) (K),Label:2H(4) (U),Label:2H(4) (Y),Label:2H(4)+Acetyl (K),Label:2H(4)+GG (K),Label:2H(4)13C(1) (R),Label:2H(6)15N(1) (P),Label:2H(7)15N(4) (R),Label:2H(9)13C(6)15N(2) (K),lapachenole (C),Leu->MetOx (L),LG-anhydrolactam (K),LG-anhydrolactam (N-term),LG-anhyropyrrole (K),LG-anhyropyrrole (N-term),LG-Hlactam-K (K),LG-Hlactam-K (Protein N-term),LG-Hlactam-R (R),LG-lactam-K (K),LG-lactam-K (Protein N-term),LG-lactam-R (R),LG-pyrrole (C),LG-pyrrole (K),LG-pyrrole (N-term),Lipoyl (K),LRGG (K),LRGG+dimethyl (K),LRGG+methyl (K),LTX+Lophotoxin (Y),Lys (N-term),Lys+O(2) (H),Lys->Ala (K),Lys->Allysine (K),Lys->AminoadipicAcid (K),Lys->Arg (K),Lys->Asn (K),Lys->Asp (K),Lys->CamCys (K),Lys->Cys (K),Lys->Gln (K),Lys->Glu (K),Lys->Gly (K),Lys->His (K),Lys->Met (K),Lys->MetOx (K),Lys->Phe (K),Lys->Pro (K),Lys->Ser (K),Lys->Thr (K),Lys->Trp (K),Lys->Tyr (K),Lys->Val (K),Lys->Xle (K),Lys-loss (Protein C-term K),Lysbiotinhydrazide (K),maleimide (C),maleimide (K),Maleimide-PEO2-Biotin (C),maleimide3 (C),maleimide3 (K),maleimide5 (C),maleimide5 (K),Malonyl (C),Malonyl (K),Malonyl (S),MBS+peptide (C),MDCC (C),MeMePhosphorothioate (S),Menadione (C),Menadione (K),Menadione-HQ (C),Menadione-HQ (K),MercaptoEthanol (S),MercaptoEthanol (T),MesitylOxide (H),MesitylOxide (K),MesitylOxide (Protein N-term),Met+O(2) (H),Met->Aha (M),Met->Ala (M),Met->Arg (M),Met->Asn (M),Met->Asp (M),Met->AspSA (M),Met->Cys (M),Met->Gln (M),Met->Glu (M),Met->Gly (M),Met->His (M),Met->Hpg (M),Met->Hse (C-term M),Met->Hsl (C-term M),Met->Lys (M),Met->Phe (M),Met->Pro (M),Met->Ser (M),Met->Thr (M),Met->Trp (M),Met->Tyr (M),Met->Val (M),Met->Xle (M),Met-loss (Protein N-term M),Met-loss+Acetyl (Protein N-term M),Methamidophos-O (C),Methamidophos-O (H),Methamidophos-O (K),Methamidophos-O (S),Methamidophos-O (T),Methamidophos-O (Y),Methamidophos-S (C),Methamidophos-S (H),Methamidophos-S (K),Methamidophos-S (S),Methamidophos-S (T),Methamidophos-S (Y),Methyl (C),Methyl (C-term),Methyl (D),Methyl (E),Methyl (H),Methyl (I),Methyl (K),Methyl (L),Methyl (N),Methyl (N-term),Methyl (Protein N-term),Methyl (Q),Methyl (R),Methyl (S),Methyl (T),Methyl+Acetyl:2H(3) (K),Methyl+Deamidated (N),Methyl+Deamidated (Q),Methyl-PEO12-Maleimide (C),Methyl:2H(2) (K),Methyl:2H(2) (N-term),Methyl:2H(2)13C (C),Methyl:2H(2)13C (C-term),Methyl:2H(2)13C (D),Methyl:2H(2)13C (E),Methyl:2H(2)13C (H),Methyl:2H(2)13C (I),Methyl:2H(2)13C (K),Methyl:2H(2)13C (L),Methyl:2H(2)13C (N),Methyl:2H(2)13C (N-term),Methyl:2H(2)13C (Protein N-term),Methyl:2H(2)13C (Q),Methyl:2H(2)13C (R),Methyl:2H(2)13C (S),Methyl:2H(2)13C (T),Methyl:2H(3) (D),Methyl:2H(3) (E),Methyl:2H(3) (K),Methyl:2H(3) (R),Methyl:2H(3) (X),Methyl:2H(3)+Acetyl:2H(3) (K),Methyl:2H(3)13C(1) (K),Methyl:2H(3)13C(1) (N-term),Methyl:2H(3)13C(1) (R),Methylamine (S),Methylamine (T),Methylmalonylation (S),methylol (K),methylol (W),methylol (Y),Methylphosphonate (S),Methylphosphonate (T),Methylphosphonate (Y),Methylpyrroline (K),methylsulfonylethyl (C),methylsulfonylethyl (H),methylsulfonylethyl (K),Methylthio (C),Methylthio (D),Methylthio (K),Methylthio (N),Methylthio (N-term),MG-H1 (R),Microcin (Protein C-term),MicrocinC7 (Protein C-term),MM-diphenylpentanone (C),Molybdopterin (C),MolybdopterinGD (C),MolybdopterinGD (D),MolybdopterinGD (U),MolybdopterinGD+Delta:S(-1)Se(1) (C),monomethylphosphothione (C),monomethylphosphothione (H),monomethylphosphothione (K),monomethylphosphothione (S),monomethylphosphothione (T),monomethylphosphothione (Y),mTRAQ (H),mTRAQ (K),mTRAQ (N-term),mTRAQ (S),mTRAQ (T),mTRAQ (Y),mTRAQ:13C(3)15N(1) (H),mTRAQ:13C(3)15N(1) (K),mTRAQ:13C(3)15N(1) (N-term),mTRAQ:13C(3)15N(1) (S),mTRAQ:13C(3)15N(1) (T),mTRAQ:13C(3)15N(1) (Y),mTRAQ:13C(6)15N(2) (H),mTRAQ:13C(6)15N(2) (K),mTRAQ:13C(6)15N(2) (N-term),mTRAQ:13C(6)15N(2) (S),mTRAQ:13C(6)15N(2) (T),mTRAQ:13C(6)15N(2) (Y),MTSL (C),MurNAc (A),Myristoleyl (Protein N-term G),Myristoyl (C),Myristoyl (K),Myristoyl (N-term G),Myristoyl+Delta:H(-4) (Protein N-term G),N-dimethylphosphate (S),NA-LNO2 (C),NA-LNO2 (H),NA-OA-NO2 (C),NA-OA-NO2 (H),NBS (W),NBS:13C(6) (W),NDA (K),NDA (N-term),NEIAA (C),NEIAA (Y),NEIAA:2H(5) (C),NEIAA:2H(5) (Y),NEM:2H(5) (C),NEM:2H(5)+H2O (C),NEMsulfur (C),NEMsulfurWater (C),Nethylmaleimide (C),Nethylmaleimide+water (C),Nethylmaleimide+water (K),NeuAc (N),NeuAc (S),NeuAc (T),NeuGc (N),NeuGc (S),NeuGc (T),NHS-fluorescein (K),NHS-LC-Biotin (K),NHS-LC-Biotin (N-term),NIC (K),NIC (N-term),NIPCAM (C),Nitrene (Y),Nitro (F),Nitro (W),Nitro (Y),Nitrosyl (C),Nitrosyl (Y),Nmethylmaleimide (C),Nmethylmaleimide (K),Nmethylmaleimide+water (C),NO_SMX_SEMD (C),NO_SMX_SIMD (C),NP40 (N-term),NQIGG (K),O-Dimethylphosphate (S),O-Dimethylphosphate (T),O-Dimethylphosphate (Y),O-Et-N-diMePhospho (S),O-Isopropylmethylphosphonate (S),O-Isopropylmethylphosphonate (T),O-Isopropylmethylphosphonate (Y),O-Methylphosphate (S),O-Methylphosphate (T),O-Methylphosphate (Y),O-pinacolylmethylphosphonate (H),O-pinacolylmethylphosphonate (K),O-pinacolylmethylphosphonate (S),O-pinacolylmethylphosphonate (T),O-pinacolylmethylphosphonate (Y),Octanoyl (C),Octanoyl (S),Octanoyl (T),OxArgBiotin (R),OxArgBiotinRed (R),Oxidation (C),Oxidation (C-term G),Oxidation (D),Oxidation (E),Oxidation (F),Oxidation (H),Oxidation (I),Oxidation (K),Oxidation (L),Oxidation (M),Oxidation (N),Oxidation (P),Oxidation (Q),Oxidation (R),Oxidation (S),Oxidation (T),Oxidation (U),Oxidation (V),Oxidation (W),Oxidation (Y),Oxidation+NEM (C),OxLysBiotin (K),OxLysBiotinRed (K),OxProBiotin (P),OxProBiotinRed (P),Palmitoleyl (C),Palmitoleyl (S),Palmitoleyl (T),Palmitoyl (C),Palmitoyl (K),Palmitoyl (Protein N-term),Palmitoyl (S),Palmitoyl (T),PEITC (C),PEITC (K),PEITC (N-term),Pent(1)HexNAc(1) (S),Pent(1)HexNAc(1) (T),Pent(2) (S),Pent(2) (T),Pentose (S),Pentose (T),Pentylamine (Q),PEO-Iodoacetyl-LC-Biotin (C),PET (S),PET (T),Phe->Ala (F),Phe->Arg (F),Phe->Asn (F),Phe->Asp (F),Phe->CamCys (F),Phe->Cys (F),Phe->Gln (F),Phe->Glu (F),Phe->Gly (F),Phe->His (F),Phe->Lys (F),Phe->Met (F),Phe->Pro (F),Phe->Ser (F),Phe->Thr (F),Phe->Trp (F),Phe->Tyr (F),Phe->Val (F),Phe->Xle (F),phenyl-phosphate (K),phenyl-phosphate (S),phenyl-phosphate (T),phenyl-phosphate (Y),Phenylisocyanate (N-term),Phenylisocyanate:2H(5) (N-term),phenylsulfonylethyl (C),Phospho (C),Phospho (D),Phospho (E),Phospho (H),Phospho (K),Phospho (R),Phospho (S),Phospho (T),Phospho (Y),Phosphoadenosine (H),Phosphoadenosine (K),Phosphoadenosine (S),Phosphoadenosine (T),Phosphoadenosine (Y),PhosphoCytidine (S),PhosphoCytidine (T),PhosphoCytidine (Y),Phosphogluconoylation (K),Phosphogluconoylation (N-term),Phosphoguanosine (H),Phosphoguanosine (K),PhosphoHex (S),PhosphoHex (T),PhosphoHex(2) (N),PhosphoHex(2) (S),PhosphoHex(2) (T),PhosphoHexNAc (S),PhosphoHexNAc (T),Phosphopantetheine (S),Phosphopropargyl (S),Phosphopropargyl (T),Phosphopropargyl (Y),phosphoRibosyl (D),phosphoRibosyl (E),phosphoRibosyl (R),PhosphoribosyldephosphoCoA (S),PhosphoUridine (H),PhosphoUridine (Y),Phycocyanobilin (C),Phycoerythrobilin (C),Phytochromobilin (C),Piperidine (K),Piperidine (N-term),Pro+O(2) (H),Pro->Ala (P),Pro->Arg (P),Pro->Asn (P),Pro->Asp (P),Pro->Cys (P),Pro->Gln (P),Pro->Glu (P),Pro->Gly (P),Pro->HAVA (P),Pro->His (P),Pro->Lys (P),Pro->Met (P),Pro->Phe (P),Pro->pyro-Glu (P),Pro->Pyrrolidinone (P),Pro->Pyrrolidone (P),Pro->Ser (P),Pro->Thr (P),Pro->Trp (P),Pro->Tyr (P),Pro->Val (P),Pro->Xle (P),probiotinhydrazide (P),Propargylamine (C-term),Propargylamine (D),Propargylamine (E),Propionamide (C),Propionamide (K),Propionamide (N-term),Propionamide:2H(3) (C),Propionyl (K),Propionyl (N-term),Propionyl (Protein N-term),Propionyl (S),Propionyl (T),Propionyl:13C(3) (K),Propionyl:13C(3) (N-term),Propiophenone (C),Propiophenone (H),Propiophenone (K),Propiophenone (R),Propiophenone (S),Propiophenone (T),Propiophenone (W),Propyl (C-term),Propyl (D),Propyl (E),Propyl (K),Propyl (N-term),Propyl (Protein C-term),Propyl:2H(6) (K),Propyl:2H(6) (N-term),PropylNAGthiazoline (C),PS_Hapten (C),PS_Hapten (H),PS_Hapten (K),pupylation (K),Puromycin (C-term),PyMIC (N-term),PyridoxalPhosphate (K),PyridoxalPhosphateH2 (K),Pyridylacetyl (K),Pyridylacetyl (N-term),Pyridylethyl (C),Pyro-carbamidomethyl (N-term C),pyrophospho (S),pyrophospho (T),PyruvicAcidIminyl (K),PyruvicAcidIminyl (Protein N-term C),PyruvicAcidIminyl (Protein N-term V),QAT (C),QAT:2H(3) (C),QEQTGG (K),QQQTGG (K),QTGG (K),Quinone (W),Quinone (Y),RBS-ID_Uridine (A),RBS-ID_Uridine (C),RBS-ID_Uridine (D),RBS-ID_Uridine (E),RBS-ID_Uridine (F),RBS-ID_Uridine (G),RBS-ID_Uridine (H),RBS-ID_Uridine (I),RBS-ID_Uridine (K),RBS-ID_Uridine (L),RBS-ID_Uridine (M),RBS-ID_Uridine (N),RBS-ID_Uridine (P),RBS-ID_Uridine (Q),RBS-ID_Uridine (R),RBS-ID_Uridine (S),RBS-ID_Uridine (T),RBS-ID_Uridine (V),RBS-ID_Uridine (W),RBS-ID_Uridine (Y),Retinylidene (K),RNPXL (N-term K),RNPXL (N-term R),RNPXlink1 (C),s-GlcNAc (S),s-GlcNAc (T),Saligenin (H),Saligenin (K),Ser->Ala (S),Ser->Arg (S),Ser->Asn (S),Ser->Asp (S),Ser->Cys (S),Ser->Gln (S),Ser->Glu (S),Ser->Gly (S),Ser->His (S),Ser->LacticAcid (Protein N-term S),Ser->Lys (S),Ser->Met (S),Ser->Phe (S),Ser->Pro (S),Ser->Thr (S),Ser->Trp (S),Ser->Tyr (S),Ser->Val (S),Ser->Xle (S),serotonylation (Q),shTMT (K),shTMT (N-term),shTMT (Protein N-term),shTMTpro (K),shTMTpro (N-term),shTMTpro (Protein N-term),SMA (K),SMA (N-term),spermidine (Q),spermine (Q),SPITC (K),SPITC (N-term),SPITC:13C(6) (K),SPITC:13C(6) (N-term),Succinyl (K),Succinyl (N-term),Succinyl (Protein N-term),Succinyl:13C(4) (K),Succinyl:13C(4) (N-term),Succinyl:2H(4) (K),Succinyl:2H(4) (N-term),SulfanilicAcid (C-term),SulfanilicAcid (D),SulfanilicAcid (E),SulfanilicAcid:13C(6) (C-term),SulfanilicAcid:13C(6) (D),SulfanilicAcid:13C(6) (E),Sulfide (C),Sulfide (D),Sulfide (W),Sulfo (C),Sulfo (S),Sulfo (T),Sulfo (Y),sulfo+amino (Y),Sulfo-NHS-LC-LC-Biotin (K),Sulfo-NHS-LC-LC-Biotin (N-term),SulfoGMBS (C),SulfurDioxide (C),SUMO2135 (K),SUMO3549 (K),TAMRA-FP (S),TAMRA-FP (Y),Thiadiazole (C),Thiazolidine (C),Thiazolidine (F),Thiazolidine (H),Thiazolidine (K),Thiazolidine (Protein N-term),Thiazolidine (R),Thiazolidine (W),Thiazolidine (Y),thioacylPA (K),Thiophos-S-S-biotin (S),Thiophos-S-S-biotin (T),Thiophos-S-S-biotin (Y),Thiophospho (S),Thiophospho (T),Thiophospho (Y),Thr->Ala (T),Thr->Arg (T),Thr->Asn (T),Thr->Asp (T),Thr->Cys (T),Thr->Gln (T),Thr->Glu (T),Thr->Gly (T),Thr->His (T),Thr->Lys (T),Thr->Met (T),Thr->Phe (T),Thr->Pro (T),Thr->Ser (T),Thr->Trp (T),Thr->Tyr (T),Thr->Val (T),Thr->Xle (T),Thrbiotinhydrazide (T),Thyroxine (Y),TMAB (K),TMAB (N-term),TMAB:2H(9) (K),TMAB:2H(9) (N-term),TMPP-Ac (K),TMPP-Ac (N-term),TMPP-Ac (Y),TMPP-Ac:13C(9) (K),TMPP-Ac:13C(9) (N-term),TMPP-Ac:13C(9) (Y),TMT (H),TMT (K),TMT (N-term),TMT (Protein N-term),TMT (S),TMT (T),TMT2plex (H),TMT2plex (K),TMT2plex (N-term),TMT2plex (Protein N-term),TMT2plex (S),TMT2plex (T),TMT6plex (H),TMT6plex (K),TMT6plex (N-term),TMT6plex (Protein N-term),TMT6plex (S),TMT6plex (T),TMTpro (H),TMTpro (K),TMTpro (N-term),TMTpro (Protein N-term),TMTpro (S),TMTpro (T),TMTpro_zero (H),TMTpro_zero (K),TMTpro_zero (N-term),TMTpro_zero (Protein N-term),TMTpro_zero (S),TMTpro_zero (T),TNBS (K),TNBS (N-term),trifluoro (L),Triiodo (Y),Triiodothyronine (Y),Trimethyl (K),Trimethyl (Protein N-term A),Trimethyl (R),Trimethyl:13C(3)2H(9) (K),Trimethyl:13C(3)2H(9) (R),Trimethyl:2H(9) (K),Trimethyl:2H(9) (R),Trioxidation (C),Trioxidation (F),Trioxidation (W),Trioxidation (Y),Tripalmitate (Protein N-term C),Tris (N),Triton (C-term),Triton (N-term),Trp->Ala (W),Trp->Arg (W),Trp->Asn (W),Trp->Asp (W),Trp->Cys (W),Trp->Gln (W),Trp->Glu (W),Trp->Gly (W),Trp->His (W),Trp->Hydroxykynurenin (W),Trp->Kynurenin (W),Trp->Lys (W),Trp->Met (W),Trp->Oxolactone (W),Trp->Phe (W),Trp->Pro (W),Trp->Ser (W),Trp->Thr (W),Trp->Tyr (W),Trp->Val (W),Trp->Xle (W),Tween20 (N-term),Tween80 (C-term),Tyr->Ala (Y),Tyr->Arg (Y),Tyr->Asn (Y),Tyr->Asp (Y),Tyr->Cys (Y),Tyr->Dha (Y),Tyr->Gln (Y),Tyr->Glu (Y),Tyr->Gly (Y),Tyr->His (Y),Tyr->Lys (Y),Tyr->Met (Y),Tyr->Phe (Y),Tyr->Pro (Y),Tyr->Ser (Y),Tyr->Thr (Y),Tyr->Trp (Y),Tyr->Val (Y),Tyr->Xle (Y),Ub-Br2 (C),Ub-fluorescein (C),Ub-VME (C),UgiJoullie (D),UgiJoullie (E),UgiJoullieProGly (D),UgiJoullieProGly (E),UgiJoullieProGlyProGly (D),UgiJoullieProGlyProGly (E),Unknown:162 (C-term),Unknown:162 (D),Unknown:162 (E),Unknown:162 (N-term),Unknown:177 (C-term),Unknown:177 (D),Unknown:177 (E),Unknown:177 (N-term),Unknown:210 (C-term),Unknown:210 (D),Unknown:210 (E),Unknown:210 (N-term),Unknown:216 (C-term),Unknown:216 (D),Unknown:216 (E),Unknown:216 (N-term),Unknown:234 (C-term),Unknown:234 (D),Unknown:234 (E),Unknown:234 (N-term),Unknown:248 (C-term),Unknown:248 (D),Unknown:248 (E),Unknown:248 (N-term),Unknown:250 (C-term),Unknown:250 (D),Unknown:250 (E),Unknown:250 (N-term),Unknown:302 (C-term),Unknown:302 (D),Unknown:302 (E),Unknown:302 (N-term),Unknown:306 (C-term),Unknown:306 (D),Unknown:306 (E),Unknown:306 (N-term),Unknown:420 (C-term),Unknown:420 (N-term),Val->Ala (V),Val->Arg (V),Val->Asn (V),Val->Asp (V),Val->Cys (V),Val->Gln (V),Val->Glu (V),Val->Gly (V),Val->His (V),Val->Lys (V),Val->Met (V),Val->Phe (V),Val->Pro (V),Val->Ser (V),Val->Thr (V),Val->Trp (V),Val->Tyr (V),Val->Xle (V),VFQQQTGG (K),VIEVYQEQTGG (K),Withaferin (C),Xle->Ala (I),Xle->Ala (L),Xle->Arg (I),Xle->Arg (L),Xle->Asn (I),Xle->Asn (L),Xle->Asp (I),Xle->Asp (L),Xle->Cys (I),Xle->Cys (L),Xle->Gln (I),Xle->Gln (L),Xle->Glu (I),Xle->Glu (L),Xle->Gly (I),Xle->Gly (L),Xle->His (I),Xle->His (L),Xle->Lys (I),Xle->Lys (L),Xle->Met (I),Xle->Met (L),Xle->Phe (I),Xle->Phe (L),Xle->Pro (I),Xle->Pro (L),Xle->Ser (I),Xle->Ser (L),Xle->Thr (I),Xle->Thr (L),Xle->Trp (I),Xle->Trp (L),Xle->Tyr (I),Xle->Tyr (L),Xle->Val (I),Xle->Val (L),Xlink:B10621 (C),Xlink:BMOE (C),Xlink:BS2G[113] (K),Xlink:BS2G[113] (Protein N-term),Xlink:BS2G[114] (K),Xlink:BS2G[114] (Protein N-term),Xlink:BS2G[217] (K),Xlink:BS2G[217] (Protein N-term),Xlink:BS2G[96] (K),Xlink:BS2G[96] (Protein N-term),Xlink:BuUrBu[111] (K),Xlink:BuUrBu[111] (Protein N-term),Xlink:BuUrBu[196] (K),Xlink:BuUrBu[196] (Protein N-term),Xlink:BuUrBu[213] (K),Xlink:BuUrBu[213] (Protein N-term),Xlink:BuUrBu[214] (K),Xlink:BuUrBu[214] (Protein N-term),Xlink:BuUrBu[317] (K),Xlink:BuUrBu[317] (Protein N-term),Xlink:BuUrBu[85] (K),Xlink:BuUrBu[85] (Protein N-term),Xlink:DFDNB (K),Xlink:DFDNB (N),Xlink:DFDNB (Q),Xlink:DFDNB (R),Xlink:DMP[122] (K),Xlink:DMP[122] (Protein N-term),Xlink:DMP[139] (K),Xlink:DMP[139] (Protein N-term),Xlink:DMP[140] (K),Xlink:DMP[140] (Protein N-term),Xlink:DMP[154] (K),Xlink:DMP[154] (Protein N-term),Xlink:DSS[138] (K),Xlink:DSS[138] (Protein N-term),Xlink:DSS[155] (K),Xlink:DSS[155] (Protein N-term),Xlink:DSS[156] (K),Xlink:DSS[156] (Protein N-term),Xlink:DSS[259] (K),Xlink:DSS[259] (Protein N-term),Xlink:DSSO[104] (K),Xlink:DSSO[104] (Protein N-term),Xlink:DSSO[158] (K),Xlink:DSSO[158] (Protein N-term),Xlink:DSSO[175] (K),Xlink:DSSO[175] (Protein N-term),Xlink:DSSO[176] (K),Xlink:DSSO[176] (Protein N-term),Xlink:DSSO[279] (K),Xlink:DSSO[279] (Protein N-term),Xlink:DSSO[54] (K),Xlink:DSSO[54] (Protein N-term),Xlink:DSSO[86] (K),Xlink:DSSO[86] (Protein N-term),Xlink:DST[114] (K),Xlink:DST[114] (Protein N-term),Xlink:DST[132] (K),Xlink:DST[132] (Protein N-term),Xlink:DST[56] (K),Xlink:DST[56] (Protein N-term),Xlink:DTBP[172] (K),Xlink:DTBP[172] (Protein N-term),Xlink:DTBP[87] (K),Xlink:DTBP[87] (Protein N-term),Xlink:DTSSP[174] (K),Xlink:DTSSP[174] (Protein N-term),Xlink:DTSSP[192] (K),Xlink:DTSSP[192] (Protein N-term),Xlink:DTSSP[88] (K),Xlink:DTSSP[88] (Protein N-term),Xlink:EGS[115] (K),Xlink:EGS[115] (Protein N-term),Xlink:EGS[226] (K),Xlink:EGS[226] (Protein N-term),Xlink:EGS[244] (K),Xlink:EGS[244] (Protein N-term),Xlink:SMCC[219] (C),Xlink:SMCC[219] (K),Xlink:SMCC[219] (Protein N-term),Xlink:SMCC[237] (C),Xlink:SMCC[237] (K),Xlink:SMCC[237] (Protein N-term),Xlink:SMCC[321] (C),ZGB (K),ZGB (N-term),ZQG (K)
legacy_conversionfalse Use the indirect conversion of MS-GF+ results to idXML via export to TSV. Try this only if the default conversion takes too long or uses too much memory.true,false
conf Optional MSGF+ configuration file (passed as -conf to MSGF+). See documentation for examples. Parameters of the adapter take precedence. Use conf file only for settings not available here (for example, any fixed/var modifications, in the conf file will be ignored, since they are provided via -mod flag)input file
java_executablejava The Java executable. Usually Java is on the system PATH. If Java is not found, use this parameter to specify the full path to Javainput file
java_memory3500 Maximum Java heap size (in MB)
java_permgen0 Maximum Java permanent generation space (in MB); only for Java 7 and below
reindextrue Recalculate peptide to protein association using OpenMS. Annotates target-decoy information.true,false
log Name of log file (created only when specified)
debug0 Sets the debug level
threads1 Sets the number of threads allowed to be used by the TOPP tool
no_progressfalse Disables progress logging to command linetrue,false
forcefalse Overrides tool-specific checkstrue,false
testfalse Enables the test mode (needed for internal use only)true,false
+++PeptideIndexing
decoy_string String that was appended (or prefixed - see 'decoy_string_position' flag below) to the accessions in the protein database to indicate decoy proteins. If empty (default), it's determined automatically (checking for common terms, both as prefix and suffix).
decoy_string_positionprefix Is the 'decoy_string' prepended (prefix) or appended (suffix) to the protein accession? (ignored if decoy_string is empty)prefix,suffix
missing_decoy_actionwarn Action to take if NO peptide was assigned to a decoy protein (which indicates wrong database or decoy string): 'error' (exit with error, no output), 'warn' (exit with success, warning message), 'silent' (no action is taken, not even a warning)error,warn,silent
write_protein_sequencefalse If set, the protein sequences are stored as well.true,false
write_protein_descriptionfalse If set, the protein description is stored as well.true,false
keep_unreferenced_proteinsfalse If set, protein hits which are not referenced by any peptide are kept.true,false
unmatched_actionerror If peptide sequences cannot be matched to any protein: 1) raise an error; 2) warn (unmatched PepHits will miss target/decoy annotation with downstream problems); 3) remove the hit.error,warn,remove
aaa_max3 Maximal number of ambiguous amino acids (AAAs) allowed when matching to a protein database with AAAs. AAAs are 'B', 'J', 'Z' and 'X'.0:10
mismatches_max0 Maximal number of mismatched (mm) amino acids allowed when matching to a protein database. The required runtime is exponential in the number of mm's; apply with care. MM's are allowed in addition to AAA's.0:10
IL_equivalentfalse Treat the isobaric amino acids isoleucine ('I') and leucine ('L') as equivalent (indistinguishable). Also occurrences of 'J' will be treated as 'I' thus avoiding ambiguous matching.true,false
allow_nterm_protein_cleavagetrue Allow the protein N-terminus amino acid to clip.true,false
++++enzyme
nameauto Enzyme which determines valid cleavage sites - e.g. trypsin cleaves after lysine (K) or arginine (R), but not before proline (P). Default: deduce from inputauto,Trypsin,Lys-C/P,PepsinA,TrypChymo,Trypsin/P,V8-DE,V8-E,leukocyte elastase,Chymotrypsin,Chymotrypsin/P,CNBr,Formic_acid,elastase-trypsin-chymotrypsin,no cleavage,unspecific cleavage,iodosobenzoate,staphylococcal protease/D,proline-endopeptidase/HKR,Glu-C+P,PepsinA + P,cyanogen-bromide,Clostripain/P,Arg-C/P,Arg-C,proline endopeptidase,glutamyl endopeptidase,Alpha-lytic protease,2-iodobenzoate,Lys-C,Lys-N,Asp-N,Asp-N/B,Asp-N_ambic
specificityauto Specificity of the enzyme. Default: deduce from input.
'full': both internal cleavage sites must match.
'semi': one of two internal cleavage sites must match.
'none': allow all peptide hits no matter their context (enzyme is irrelevant).
auto,full,semi,none