OpenMS  3.0.0
Transitions.h
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31 // $Maintainer: Hannes Roest $
32 // $Authors: Hannes Roest $
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34 
35 #pragma once
36 
37 #include <OpenMS/OPENSWATHALGO/OpenSwathAlgoConfig.h>
38 #include <string>
39 #include <vector>
41 
42 namespace OpenSwath
43 {
44 
45  struct OPENSWATHALGO_DLLAPI Peptide
46  {
47  double rt;
48  int charge;
49  std::string sequence;
50  std::string id;
51  int getChargeState() const
52  {
53  return charge;
54  }
55 
56  std::vector<LightModification> modifications;
57  std::vector<LightTransition> transitions;
58  };
59 
60  struct OPENSWATHALGO_DLLAPI Protein
61  {
62  std::string id;
63  std::string sequence;
64  std::vector<Peptide> peptides;
65  };
66 
67  struct OPENSWATHALGO_DLLAPI TargetedExperiment
68  {
69  std::vector<Protein> proteins;
70  };
71 
72 }
73 
OpenSwath
Definition: Scoring.h:43
OpenSwath::TargetedExperiment
Definition: Transitions.h:67
TransitionExperiment.h
OpenSwath::Protein::peptides
std::vector< Peptide > peptides
Definition: Transitions.h:64
OpenSwath::Protein
Definition: Transitions.h:60
OpenSwath::Protein::id
std::string id
Definition: Transitions.h:62
OpenSwath::Peptide::transitions
std::vector< LightTransition > transitions
Definition: Transitions.h:57
OpenSwath::Protein::sequence
std::string sequence
Definition: Transitions.h:63
OpenSwath::Peptide::modifications
std::vector< LightModification > modifications
Definition: Transitions.h:56
OpenSwath::TargetedExperiment::proteins
std::vector< Protein > proteins
Definition: Transitions.h:69
OpenSwath::Peptide::sequence
std::string sequence
Definition: Transitions.h:49
OpenSwath::Peptide::getChargeState
int getChargeState() const
Definition: Transitions.h:51
OpenSwath::Peptide::id
std::string id
Definition: Transitions.h:50
OpenSwath::Peptide::charge
int charge
Definition: Transitions.h:48
OpenSwath::Peptide
Definition: Transitions.h:45
OpenSwath::Peptide::rt
double rt
Definition: Transitions.h:47