OpenMS  2.6.0
Public Types | Public Member Functions | Static Public Member Functions | Private Attributes | List of all members
IDFilter::PeptideDigestionFilter Class Reference

Filter Peptide Hit by its digestion product. More...

#include <OpenMS/FILTERING/ID/IDFilter.h>

Collaboration diagram for IDFilter::PeptideDigestionFilter:
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Public Types

typedef PeptideHit argument_type
 

Public Member Functions

 PeptideDigestionFilter (EnzymaticDigestion &digestion, Int min, Int max)
 
bool operator() (PeptideHit &p) const
 
void filterPeptideSequences (std::vector< PeptideHit > &hits)
 

Static Public Member Functions

static Int disabledValue ()
 

Private Attributes

EnzymaticDigestiondigestion_
 
Int min_cleavages_
 
Int max_cleavages_
 

Detailed Description

Filter Peptide Hit by its digestion product.

Member Typedef Documentation

◆ argument_type

Constructor & Destructor Documentation

◆ PeptideDigestionFilter()

PeptideDigestionFilter ( EnzymaticDigestion digestion,
Int  min,
Int  max 
)
inline

Member Function Documentation

◆ disabledValue()

static Int disabledValue ( )
inlinestatic

◆ filterPeptideSequences()

void filterPeptideSequences ( std::vector< PeptideHit > &  hits)
inline

◆ operator()()

bool operator() ( PeptideHit p) const
inline

Filter function on min max cutoff values to be used with remove_if returns true if peptide should be removed (does not pass filter)

References EnzymaticDigestion::filterByMissedCleavages(), PeptideHit::getSequence(), and AASequence::toUnmodifiedString().

Member Data Documentation

◆ digestion_

EnzymaticDigestion& digestion_
private

◆ max_cleavages_

Int max_cleavages_
private

◆ min_cleavages_

Int min_cleavages_
private